PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0805s0005.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 281aa    MW: 32285.1 Da    PI: 9.2867
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0805s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM149.91.2e-4681353128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          pGfrFhPt+eel+++yLk+ v gk+ ++ evi+ ++iy+++PwdLp  +   +e+ewyfF++r++k+ +g r++r+t++gyWkatg+d++
  Cagra.0805s0005.1.p   8 PGFRFHPTEEELLDFYLKNMVYGKRSSV-EVISFLNIYRHDPWDLPgLSRILGEREWYFFVPRERKHGNGGRPSRTTEKGYWKATGSDRK 96 
                          9************************999.99***************533334789*********************************** PP

                  NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++s    ++++glkktLvfy+grap g+ktdWvm+e+r+
  Cagra.0805s0005.1.p  97 IISLsePKRVIGLKKTLVFYRGRAPGGSKTDWVMNEFRM 135
                          *987557778***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-566153IPR003441NAC domain
PROSITE profilePS5100554.2556153IPR003441NAC domain
PfamPF023651.3E-248135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGKETELPGF RFHPTEEELL DFYLKNMVYG KRSSVEVISF LNIYRHDPWD LPGLSRILGE  60
REWYFFVPRE RKHGNGGRPS RTTEKGYWKA TGSDRKIISL SEPKRVIGLK KTLVFYRGRA  120
PGGSKTDWVM NEFRMPDNCT LPKDVVLCKI YRKATSLKVL EQRAEMEAKM NQTCPNSPLS  180
SSETISFIGK EENLMMASFR APQEIAMEEA NKFLTLQENA KNQEKHREIE TRDTSSSLKL  240
PFGSLPELQL PKQGVEWGPE LLSISPWLQN LTPIVNLLNW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-44815819170NO APICAL MERISTEM PROTEIN
1ut4_B2e-44815819170NO APICAL MERISTEM PROTEIN
1ut7_A2e-44815819170NO APICAL MERISTEM PROTEIN
1ut7_B2e-44815819170NO APICAL MERISTEM PROTEIN
3swm_A2e-44815622171NAC domain-containing protein 19
3swm_B2e-44815622171NAC domain-containing protein 19
3swm_C2e-44815622171NAC domain-containing protein 19
3swm_D2e-44815622171NAC domain-containing protein 19
3swp_A2e-44815622171NAC domain-containing protein 19
3swp_B2e-44815622171NAC domain-containing protein 19
3swp_C2e-44815622171NAC domain-containing protein 19
3swp_D2e-44815622171NAC domain-containing protein 19
4dul_A2e-44815819170NAC domain-containing protein 19
4dul_B2e-44815819170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0805s0005.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3618040.0AF361804.1 Arabidopsis thaliana At2g17040 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298285.10.0NAC domain-containing protein 22
SwissprotQ10S653e-84NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLR0I4C90.0R0I4C9_9BRAS; Uncharacterized protein
STRINGCagra.0805s0005.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38992860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.10.0NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]