PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG032740.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 331aa    MW: 36970.6 Da    PI: 5.179
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG032740.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.36e-21132182155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  ++++GVr+++ +g+W AeIrdp+    r kr++lg+f+taeeAa  +++a++kl+g
  CCG032740.1 132 KKFRGVRQRP-WGKWSAEIRDPT----RrKRVWLGTFDTAEEAATVYDRAALKLKG 182
                  59********.**********84....34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.89E-34132190No hitNo description
SMARTSM003801.9E-38133196IPR001471AP2/ERF domain
PROSITE profilePS5103224.566133190IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-31133191IPR001471AP2/ERF domain
PfamPF008471.5E-13133182IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-23133191IPR016177DNA-binding domain
PRINTSPR003679.9E-11134145IPR001471AP2/ERF domain
PRINTSPR003679.9E-11156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MHLLFLDELQ PMFTSNATMS VQPKVKFTEH VFITSKLIEN QQLHPSSRTR QRLVRIIHTD  60
PDATDSSSDE EEGEQERKFV KRVKRQVSEI SLLEQETTAP AAPSSTTSND GQEPRRKRPS  120
SRLPVPEVSR QKKFRGVRQR PWGKWSAEIR DPTRRKRVWL GTFDTAEEAA TVYDRAALKL  180
KGPDAVTNFP TNSVITEKAH VNSGSSDVKC VPRESPSIRG PANVMASPPL VLRYVDLTPS  240
DLVLTEKAKV VDGQRESCES PLSGVHDMSS PTSVLPDEEL SPFDSLGYGD VDAFGFEIDV  300
PLSLPNSMLS GNFFDKEEFV DLDDFLVDAI C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-22129190163ATERF1
3gcc_A8e-22129190163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011769.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046821e-43PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLB9I7670.0B9I767_POPTR; Uncharacterized protein
STRINGPOPTR_0013s15440.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-33cytokinin response factor 4