PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG032346.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 355aa    MW: 39044 Da    PI: 9.4524
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG032346.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.61.2e-53231501128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrFhPtdeelvv+yLkkk+++ +l++  +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g+r+nra++sgyWkatg+dk++l+  ++
  CCG032346.1  23 LPPGFRFHPTDEELVVHYLKKKTTSAPLPM-AIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGTRPNRAATSGYWKATGTDKPILTLgGT 119
                  79****************************.88***************988899**************************************998678 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  ++vg+kk Lvfy g+ pkg kt+W+mheyrl
  CCG032346.1 120 QKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 150
                  88***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-6419184IPR003441NAC domain
PROSITE profilePS5100561.70923184IPR003441NAC domain
PfamPF023654.8E-2824150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MESTDSSKGG AGGGGGGSQQ PNLPPGFRFH PTDEELVVHY LKKKTTSAPL PMAIIAEVDL  60
YKFDPWELPA KATFGEQEWY FFSPRDRKYP NGTRPNRAAT SGYWKATGTD KPILTLGGTQ  120
KVGVKKALVF YGGKPPKGIK TNWIMHEYRL ADNKVKNKPP GCDLGNKKNS LRLDDWVLCR  180
IYKKNNTHRP IDHDRDDSMD DILGSIPPSI LVGNHQNGTL HLAKGTNYET LLDNDHNLFE  240
GTISSNDGIR SSSSMSHVAS TVSKPDHLPR LPLKRTLPSL YWTGEDMAVP SSSKRFQGDI  300
NGDESVVGNG GNGSIVTPLS QLPQTSQLHQ QTMLGSMGNG IFRPPYQIPG LNWYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-732018714168NO APICAL MERISTEM PROTEIN
1ut4_B6e-732018714168NO APICAL MERISTEM PROTEIN
1ut7_A6e-732018714168NO APICAL MERISTEM PROTEIN
1ut7_B6e-732018714168NO APICAL MERISTEM PROTEIN
4dul_A6e-732018714168NAC domain-containing protein 19
4dul_B6e-732018714168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029435.10.0PREDICTED: NAC domain-containing protein 18-like
SwissprotQ9LD441e-118NAC56_ARATH; NAC transcription factor 56
TrEMBLB9HZY60.0B9HZY6_POPTR; NAC family protein
STRINGPOPTR_0011s12420.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-113NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]