PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG029287.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WOX | ||||||||
Protein Properties | Length: 215aa MW: 24549.7 Da PI: 5.3885 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.7 | 1.3e-20 | 76 | 136 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++ qle+Le+ F++ n +p ++++++++++l +++e++V++WFqNrRa+ k+ CCG029287.1 76 RQRWTPKPAQLEILEQIFKQcNATPGRQKIKDITRELaqhgQISETNVYNWFQNRRARSKR 136 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 95.6 | 4.2e-31 | 75 | 138 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+p Q++iLe+++k+ tP +++i++it+eL+++G+i+++NV++WFQNr+aR+++kq CCG029287.1 75 SRQRWTPKPAQLEILEQIFKQCNATPGRQKIKDITRELAQHGQISETNVYNWFQNRRARSKRKQ 138 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.3E-17 | 71 | 140 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.45E-17 | 71 | 139 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.673 | 72 | 137 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.4E-13 | 74 | 141 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.92E-14 | 76 | 138 | No hit | No description |
Pfam | PF00046 | 2.7E-18 | 76 | 136 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MEEGRFQNCG GLGVKVMTDE QMEMLRKQIS VYATICEQLV EMHKALSAQQ DFAGMGLGNP 60 YCDPLLSSAV HKIGSRQRWT PKPAQLEILE QIFKQCNATP GRQKIKDITR ELAQHGQISE 120 TNVYNWFQNR RARSKRKQSA VVPNNGESEM ETDVESFKEK KTRAEDSQPD ENTTPMADHM 180 YFNSPDIGFD QLMGKIESPG SCIPYWQMEQ YDLFG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 137 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00669 | PBM | Transfer from GRMZM2G038252 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ010810 | 0.0 | AJ010810.1 Populus tremula X Populus tremuloides mRNA for homeodomain protein HB1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011034864.1 | 1e-164 | PREDICTED: WUSCHEL-related homeobox 8-like | ||||
Swissprot | Q5QMM3 | 4e-70 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | B9GQ01 | 1e-158 | B9GQ01_POPTR; WOX family protein | ||||
STRING | POPTR_0002s00980.1 | 1e-159 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 6e-66 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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