PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028923.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 355aa    MW: 40294 Da    PI: 5.1843
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028923.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM75.11.7e-2391392127
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka...eekewyfFskrdkkyatgk.rknra..tksgyWkatgkdke 91 
                  ppGf+F P +eel+++yL +kv+g+ ++++ + ik+ d+y   ePwd+ +k+++   +++ +yf ++ +kk+++g  + nr+  t+ g+W+  g  ke
  CCG028923.1   9 PPGFKFVPAEEELISYYLYNKVHGRLHREDATlIKDYDLYGEeEPWDIFNKFQGhkfGDNGLYFLTTLHKKTTNGIkNMNRSvgTHGGTWHGDGG-KE 105
                  89***********************98886667******97549****75443333388899**********99862567744588*****9998.78 PP

          NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                  v+s++g ++g+kk + +   ++ k++k +W++ ey 
  CCG028923.1 106 VKSSEGVVIGTKKRFRYR--KHGKPVKDRWILLEYG 139
                  9998*************8..566667********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-245141IPR003441NAC domain
PROSITE profilePS5100527.2128155IPR003441NAC domain
PfamPF023651.6E-159138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MQNGLPRPPP GFKFVPAEEE LISYYLYNKV HGRLHREDAT LIKDYDLYGE EEPWDIFNKF  60
QGHKFGDNGL YFLTTLHKKT TNGIKNMNRS VGTHGGTWHG DGGKEVKSSE GVVIGTKKRF  120
RYRKHGKPVK DRWILLEYGS ESISENIVIS QLKKSERGSS NKEPTSRKRK HINAEVFEVA  180
EDDDILKIMQ SIVINSIPIR SPALEPQQII QNQDMWLEAA TVSMEPGASM TVNSGPDLSK  240
AQEPQQITAN QEMWFEAASV AWENDGGFST EYSFDDEISF VNGEPVGLQF EPGLGNFIQE  300
PMINEHQQMA LACFNGNHQE KPISVEDYEL MGLSEATFQR SEYCSEFQRG SNHQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-12913818140NO APICAL MERISTEM PROTEIN
1ut4_B5e-12913818140NO APICAL MERISTEM PROTEIN
1ut7_A5e-12913818140NO APICAL MERISTEM PROTEIN
1ut7_B5e-12913818140NO APICAL MERISTEM PROTEIN
3swm_A4e-12913821143NAC domain-containing protein 19
3swm_B4e-12913821143NAC domain-containing protein 19
3swm_C4e-12913821143NAC domain-containing protein 19
3swm_D4e-12913821143NAC domain-containing protein 19
3swp_A4e-12913821143NAC domain-containing protein 19
3swp_B4e-12913821143NAC domain-containing protein 19
3swp_C4e-12913821143NAC domain-containing protein 19
3swp_D4e-12913821143NAC domain-containing protein 19
4dul_A5e-12913818140NAC domain-containing protein 19
4dul_B5e-12913818140NAC domain-containing protein 19
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2139180.0AC213918.1 Populus trichocarpa clone ACSB2341-L13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041410.10.0PREDICTED: uncharacterized protein LOC105137380
TrEMBLB9IHI90.0B9IHI9_POPTR; Uncharacterized protein
STRINGPOPTR_0016s02780.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14731213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.11e-12NAC domain containing protein 50