PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG028923.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 355aa MW: 40294 Da PI: 5.1843 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 75.1 | 1.7e-23 | 9 | 139 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka...eekewyfFskrdkkyatgk.rknra..tksgyWkatgkdke 91 ppGf+F P +eel+++yL +kv+g+ ++++ + ik+ d+y ePwd+ +k+++ +++ +yf ++ +kk+++g + nr+ t+ g+W+ g ke CCG028923.1 9 PPGFKFVPAEEELISYYLYNKVHGRLHREDATlIKDYDLYGEeEPWDIFNKFQGhkfGDNGLYFLTTLHKKTTNGIkNMNRSvgTHGGTWHGDGG-KE 105 89***********************98886667******97549****75443333388899**********99862567744588*****9998.78 PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyr 127 v+s++g ++g+kk + + ++ k++k +W++ ey CCG028923.1 106 VKSSEGVVIGTKKRFRYR--KHGKPVKDRWILLEYG 139 9998*************8..566667********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.89E-24 | 5 | 141 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.212 | 8 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-15 | 9 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MQNGLPRPPP GFKFVPAEEE LISYYLYNKV HGRLHREDAT LIKDYDLYGE EEPWDIFNKF 60 QGHKFGDNGL YFLTTLHKKT TNGIKNMNRS VGTHGGTWHG DGGKEVKSSE GVVIGTKKRF 120 RYRKHGKPVK DRWILLEYGS ESISENIVIS QLKKSERGSS NKEPTSRKRK HINAEVFEVA 180 EDDDILKIMQ SIVINSIPIR SPALEPQQII QNQDMWLEAA TVSMEPGASM TVNSGPDLSK 240 AQEPQQITAN QEMWFEAASV AWENDGGFST EYSFDDEISF VNGEPVGLQF EPGLGNFIQE 300 PMINEHQQMA LACFNGNHQE KPISVEDYEL MGLSEATFQR SEYCSEFQRG SNHQH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-12 | 9 | 138 | 18 | 140 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-12 | 9 | 138 | 18 | 140 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-12 | 9 | 138 | 18 | 140 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-12 | 9 | 138 | 18 | 140 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-12 | 9 | 138 | 21 | 143 | NAC domain-containing protein 19 |
3swm_B | 4e-12 | 9 | 138 | 21 | 143 | NAC domain-containing protein 19 |
3swm_C | 4e-12 | 9 | 138 | 21 | 143 | NAC domain-containing protein 19 |
3swm_D | 4e-12 | 9 | 138 | 21 | 143 | NAC domain-containing protein 19 |
3swp_A | 4e-12 | 9 | 138 | 21 | 143 | NAC domain-containing protein 19 |
3swp_B | 4e-12 | 9 | 138 | 21 | 143 | NAC domain-containing protein 19 |
3swp_C | 4e-12 | 9 | 138 | 21 | 143 | NAC domain-containing protein 19 |
3swp_D | 4e-12 | 9 | 138 | 21 | 143 | NAC domain-containing protein 19 |
4dul_A | 5e-12 | 9 | 138 | 18 | 140 | NAC domain-containing protein 19 |
4dul_B | 5e-12 | 9 | 138 | 18 | 140 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213918 | 0.0 | AC213918.1 Populus trichocarpa clone ACSB2341-L13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011041410.1 | 0.0 | PREDICTED: uncharacterized protein LOC105137380 | ||||
TrEMBL | B9IHI9 | 0.0 | B9IHI9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s02780.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14731 | 2 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.1 | 1e-12 | NAC domain containing protein 50 |