PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028728.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 644aa    MW: 70486.1 Da    PI: 6.9161
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028728.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2392e-12305361155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  CCG028728.1 305 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 361
                  78*******************77776664346655.77******************98 PP
2AP246.59.2e-15404455155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  CCG028728.1 404 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 455
                  57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.16E-14305371IPR016177DNA-binding domain
CDDcd000181.34E-18305369No hitNo description
PfamPF008471.1E-9305361IPR001471AP2/ERF domain
SMARTSM003801.1E-22306375IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-12306370IPR001471AP2/ERF domain
PROSITE profilePS5103217.359306369IPR001471AP2/ERF domain
PRINTSPR003678.3E-6307318IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-17404464IPR016177DNA-binding domain
PfamPF008471.4E-9404455IPR001471AP2/ERF domain
CDDcd000181.31E-24404465No hitNo description
SMARTSM003801.1E-33405469IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-18405463IPR001471AP2/ERF domain
PROSITE profilePS5103218.913405463IPR001471AP2/ERF domain
PRINTSPR003678.3E-6445465IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MEAASESQHH HQYHHQTQTQ THAPAPAADS VSAAVPTSFY LSTSLFNSSG ICFGVGENGG  60
FHSPLSVMPL KSDGSLCIME ALTRSQPEGM VSSLSPKLED FLGGATMESH HYSSHEREAM  120
ALSLDSIYYQ QSSEPETNGQ HSLNLHEPYR QQDQQFSVQT HPYYSGIACQ GLYQAPLEGE  180
TKGTQLADCN SPIPLMGDDE LPRLKHWVAR HYSSPNALEQ QINSGMVNDS GASCSASAVG  240
CGDLQSLSLS MSPGSQSSCI TAPRQISPAG TECVAIETKK RGPVKGGQKQ PVHRKSIDTF  300
GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQTRKGRQG GYDMEEKAAR AYDLAALKYW  360
GPSTHINFPL ENYQEELEEM KNMGRQEYVA HLRRKSSGFS RGASIYRGVT RHHQHGRWQA  420
RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGVNAVT NFNITRYDVD RIMASNTLLA  480
GELARRTRDT ESSIEAIDYN TSTQNNCVLY QSPQEQPNAS GESLDQKSMS AGNYRSTSFS  540
VAVQDLMGMD HSVNSSQLEV DESAKLGTHL SNPSSLVTSL SSSSREASPD KTGTPVLFAK  600
PPRASKFIGP TTSVTPWIQA AAAQLRPAGI SMAHLPVFAA WNDT
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2759331e-145GU275933.1 Populus balsamifera isolate GAL12 haplotype B unknown gene, partial sequence.
GenBankGU2759351e-145GU275935.1 Populus balsamifera isolate STL13 haplotype B unknown gene, partial sequence.
GenBankGU2759371e-145GU275937.1 Populus balsamifera isolate HAY07 haplotype B unknown gene, partial sequence.
GenBankGU2759391e-145GU275939.1 Populus balsamifera isolate LOV02 haplotype B unknown gene, partial sequence.
GenBankGU2759411e-145GU275941.1 Populus balsamifera isolate WHR03 haplotype B unknown gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010240.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ389141e-156ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A2K2AH000.0A0A2K2AH00_POPTR; Uncharacterized protein
STRINGPOPTR_0005s19220.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-127AP2 family protein
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Li C, et al.
    Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis.
    PLoS ONE, 2014. 9(4): p. e94830
    [PMID:24756087]
  4. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  5. Randall RS, et al.
    AINTEGUMENTA and the D-type cyclin CYCD3;1 regulate root secondary growth and respond to cytokinins.
    Biol Open, 2015. 4(10): p. 1229-36
    [PMID:26340943]
  6. Meng LS,Wang ZB,Yao SQ,Liu A
    The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis.
    J. Cell. Sci., 2015. 128(21): p. 3922-32
    [PMID:26395398]
  7. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  8. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  9. Han H,Krizek BA
    AINTEGUMENTA-LIKE6 can functionally replace AINTEGUMENTA but alters Arabidopsis flower development when misexpressed at high levels.
    Plant Mol. Biol., 2016. 92(4-5): p. 597-612
    [PMID:27605095]
  10. Karpinska B,Alomrani SO,Foyer CH
    Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling.
    Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018.
    [PMID:28808105]
  11. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]