PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028201.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 833aa    MW: 91418.9 Da    PI: 6.4753
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028201.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.84.8e-106436801954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ ++++ LA+++gLt +qV++WF N R +
  CCG028201.1 643 FEHflHPYPTDADKQMLATQTGLTRNQVSNWFINARVR 680
                  554459******************************88 PP
2BELL99.72.3e-32499567472
         BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  e q+ kakLl l eeV++rYkqy++q+q+v+ssFe vagl +a+pY++lAlk++S +FrcLk ai++q+
  CCG028201.1 499 EYQQMKAKLLFLEEEVCRRYKQYHQQMQMVASSFESVAGLSAATPYVTLALKTVSGNFRCLKHAIVDQL 567
                  67999*************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.2E-36398565IPR006563POX domain
PfamPF075261.1E-35403564IPR006563POX domain
PROSITE profilePS5007112.212621684IPR001356Homeobox domain
CDDcd000866.07E-13624685No hitNo description
SMARTSM003899.2E-11624688IPR001356Homeobox domain
SuperFamilySSF466896.84E-17626689IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-28627688IPR009057Homeodomain-like
PfamPF059201.5E-18641680IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 833 aa     Download sequence    Send to blast
MDTRNLSPDS HVAQQSRRDK LRVQQSLSSV QHIDEFPNCL EHFSIRPGLS PDPVHVRNIR  60
NGNILYDSTM FSSEMLNFAT SSHAVSASKD AIVDQELEPI PAEDSSFTSM SHPVLSNFNA  120
LSPKSTTCDP QECGNWRSLE SQQSYDLMVN YAGGSVGGER NQKPMFVGEV LSNNARVSNI  180
STSRQYWMPS YFENQDVQLP STLRNSSGEI LSDDSLKDAR EMQVTSLPPY QNTLLDAIPS  240
GCFRPRINER IVHPSYATES TALHFDNNTS TWMSRPLENY HHWSGEFGPI ARTSDQELRT  300
IGSDANNQGL SLSLSSINPP SKVEATRFGE GCASEHLQLK VARVSQESQQ DSKISKSSSF  360
CAMPKPSIIS KGGGKSLHDV VGTSTHAFRN TGPLGPFTGY ATILKSSGFL KPAQELLEEF  420
SIITGPKLMR TSEMFERISG DQASAPALAD TVNTVDEEGG TDGNDISGIS SSTFYSSNKR  480
SGSAGVGGGG GSCGSYGPEY QQMKAKLLFL EEEVCRRYKQ YHQQMQMVAS SFESVAGLSA  540
ATPYVTLALK TVSGNFRCLK HAIVDQLKQV TKTLGDDLFS RNTVAMCSKV DTSASRLRYM  600
DQSIQTNKSG GVTVGYQEPQ QHIWRPQRGL PERSVAVLRA WLFEHFLHPY PTDADKQMLA  660
TQTGLTRNQV SNWFINARVR LWKPMVEEIH LLEAKGLAEK AGKNDGNSAE GNSQSNDEEG  720
SNKFCTNSVL DKQMECYGIG SSGGCGEQLD AEQLSREKRS RVEFQVPTTM DGSPINFLPC  780
QRSGTDNGGL GAVSLTLGLR QGIESAQHQI QLQQHKGHFK QPFGGQMIHD FVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-16630687158Homeobox protein Meis1
4xrs_B3e-16630687158Homeobox protein Meis1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040912.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_011040913.10.0PREDICTED: BEL1-like homeodomain protein 4
TrEMBLA0A2K2AY550.0A0A2K2AY55_POPTR; Uncharacterized protein
STRINGPOPTR_0009s01520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34813257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.12e-76BEL1-like homeodomain 8