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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG025885.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 21481.3 Da PI: 8.3763 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2.1e-18 | 5 | 55 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+Wv+eIr+p +r++lg+f tae Aa+a+++a+ ++g CCG025885.1 5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAAILMNG 55 59*****999.**********8.....334**********************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.49E-23 | 5 | 65 | No hit | No description |
PROSITE profile | PS51032 | 22.036 | 6 | 63 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-32 | 6 | 65 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.92E-20 | 6 | 65 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.8E-39 | 6 | 69 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-11 | 6 | 55 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MVQCKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA ILMNGQNAKT 60 NFPASHLDQD TKLGKDNNSP LPAKALAELL YSKLRKCCGK DPSPSLTCLR LDNDNSHIGV 120 WQKKAGSCSS SNWVMRVELG NSNRKSTQVM EELRPSLSSE SSSRVEIEPE NGTDEEDKIA 180 MQMIEELLNC N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-17 | 5 | 63 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 2e-16 | 6 | 66 | 14 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147140 | 1e-172 | EF147140.1 Populus trichocarpa clone WS01228_C18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011039697.1 | 1e-141 | PREDICTED: ethylene-responsive transcription factor SHINE 2-like | ||||
Swissprot | Q3E958 | 2e-70 | SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3 | ||||
TrEMBL | B9HA50 | 1e-121 | B9HA50_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s26990.1 | 1e-122 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF576 | 33 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11190.1 | 3e-66 | ERF family protein |
Publications ? help Back to Top | |||
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