PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG025544.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 144aa MW: 16552.2 Da PI: 4.4615 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.2 | 1e-09 | 24 | 66 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ ++++E+ l+ + ++ G + W++Ia +++ gRt++++ +w CCG025544.1 24 KLEFSEDEETLITRMYNLVGER-WTLIAGRIP-GRTAEEIEKYWT 66 678*******************.*********.***********5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.05 | 19 | 69 | IPR017877 | Myb-like domain |
SMART | SM00717 | 4.9E-8 | 23 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-8 | 25 | 66 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.07E-8 | 26 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.17E-7 | 26 | 65 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.1E-12 | 26 | 67 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MADSDHSSSD DLSVDSRDTS QDTKLEFSED EETLITRMYN LVGERWTLIA GRIPGRTAEE 60 IEKYWTSRYS TINSNECLMT RMHEMSLDYH FTVEQEMGSA TYPTAGFWSF SAENEAGGWK 120 NRTTVLEDMD LAIRASLKGR KYHI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possesses glucomannan synthase and mannan synthase activities in vitro. Mannan synthase consists of a 4-beta-mannosyltransferase activity on mannan using GDP-mannose. The beta-1,4-mannan product is the backbone for galactomannan synthesis by galactomannan galactosyltransferase. Galactomannan is a noncellulosic polysaccharides of plant cell wall (PubMed:15647349, PubMed:17307900). Required for lateral root development (PubMed:14612582). {ECO:0000269|PubMed:14612582, ECO:0000269|PubMed:15647349, ECO:0000269|PubMed:17307900}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ397516 | 3e-44 | FQ397516.1 Vitis vinifera clone SS0AEB6YI23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9LZR3 | 4e-31 | CSLA9_ARATH; Glucomannan 4-beta-mannosyltransferase 9 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2692 | 31 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46410.1 | 4e-19 | MYB_related family protein |