PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG025127.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 590aa MW: 66532.5 Da PI: 5.0784 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.4 | 7.3e-33 | 192 | 331 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyW 83 lp+G++F+P+d+e++++ L+k v++ + +e+i++vd i++++P++Lp vk++ + +fF+k+ k+y+tg+rk+r+++ + +W CCG025127.1 192 LPRGVKFDPSDQEIIWHLLAK-VSDGGikphpfI--KEFIPTVDnddgICYTHPQNLP-GVKQDGSISHFFHKAIKAYNTGTRKRRKIQaddfgDVRW 285 699************666655.555553664322..345766655667**********.677777888******************86555665889* PP NAM 84 katgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++tg++k+v+ +g ++g+kk++v+y + r k+ekt+Wvmh+y+l CCG025127.1 286 HKTGRTKPVIL-DGIQKGCKKIMVLYmsTVRGGKAEKTNWVMHQYHL 331 ***********.99************6556888999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.55E-39 | 177 | 350 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.939 | 192 | 350 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.2E-14 | 193 | 331 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 590 aa Download sequence Send to blast |
MEYAALRTSV DTYESSCYWF PDLAFHALGG AGVLLYIDWW RKLNSGACSG RYFAVTSNAQ 60 DYFGFLHNGS RFNQMSTDIR SQALFDHGKL AWPNVSHELP AFSYNTFPAE IVKKQPKSEL 120 VHEVQTVLPV QQGPSFRLPW LVDGNRFATK IKSASGASNL ERVEWKSDPC KTCPNCHHVI 180 DNSDVVQEWP GLPRGVKFDP SDQEIIWHLL AKVSDGGIKP HPFIKEFIPT VDNDDGICYT 240 HPQNLPGVKQ DGSISHFFHK AIKAYNTGTR KRRKIQADDF GDVRWHKTGR TKPVILDGIQ 300 KGCKKIMVLY MSTVRGGKAE KTNWVMHQYH LGTGEDERDG EYVVSKIFFQ QQQANKGEKP 360 EEDLSEIVDD VVAKVDPVTP KSVTPDPPRA ERRCQDFEVG QESTSICTDP CAQQPGIECL 420 EVEDNLQHEN PSYIDQLETE NNVNDMVGDN DNCAGEERKW WDSESQQLLD SQQLVEGLSL 480 CAEFLQSQSP DRGGHGTEAN GKTGLSDYAL LGPEYLKKDL EECQNLELDQ ANIELDTPPE 540 FRLSQLHGWL LVGKLERDPY KQLHWQAAWQ YVVGELAYIA ALSRVPTCLA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011008569.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 isoform X1 | ||||
Refseq | XP_011008576.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 isoform X2 | ||||
Swissprot | Q6NQK2 | 1e-163 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | B9HWM0 | 0.0 | B9HWM0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s13980.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5662 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-153 | NAC family protein |