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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG024261.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 335aa MW: 37563.4 Da PI: 4.4397 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.3 | 5.1e-20 | 101 | 150 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa+ +++a+ kl+g CCG024261.1 101 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAARVYDNAAIKLRG 150 89*******.**********82....35*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.8E-30 | 100 | 157 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-21 | 101 | 157 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.118 | 101 | 158 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.79E-34 | 101 | 157 | No hit | No description |
SMART | SM00380 | 1.3E-38 | 101 | 164 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.3E-13 | 101 | 150 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 102 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 124 | 140 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MVRSDDRCRS PEPSNPAPRL VRVTVTDHDA TDSSSDEEGE LFGRQRVKRY VNEINIQPAA 60 FCKETNVIAA TIAKNRKRSV GDIPQKPAKR FTPQSTTNGR KFRGVRQRPW GKWAAEIRDP 120 ARRVRLWLGT YDTAEEAARV YDNAAIKLRG PDALTNFITP PSREDDQEEE KSSPVEESEE 180 KKPEINVEAV SGSGYESADE SHSLSSPKSV LTYRLPSAES HKPPSQPFQE AKMEPKPQDN 240 EEAFGESNLS DYLPLDSPFL DDFFNFGTSG PTLFDDQVLA TTTTATSIFQ ESIMCDQDFG 300 DIFLDPLQDF TSLPSVCQED DDFFHFLNSE PLTAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-20 | 99 | 157 | 3 | 62 | ATERF1 |
3gcc_A | 4e-20 | 99 | 157 | 3 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011001929.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF4-like | ||||
Refseq | XP_011016600.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF4-like | ||||
TrEMBL | A0A2K1Y860 | 0.0 | A0A2K1Y860_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s01260.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 1e-64 | cytokinin response factor 4 |