PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023075.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 335aa    MW: 37563.4 Da    PI: 4.4397
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023075.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.1e-20101150255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa+ +++a+ kl+g
  CCG023075.1 101 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAARVYDNAAIKLRG 150
                  89*******.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.8E-30100157IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-21101157IPR016177DNA-binding domain
PROSITE profilePS5103224.118101158IPR001471AP2/ERF domain
CDDcd000183.79E-34101157No hitNo description
SMARTSM003801.3E-38101164IPR001471AP2/ERF domain
PfamPF008473.3E-13101150IPR001471AP2/ERF domain
PRINTSPR003671.7E-10102113IPR001471AP2/ERF domain
PRINTSPR003671.7E-10124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MVRSDDRCRS PEPSNPAPRL VRVTVTDHDA TDSSSDEEGE LFGRQRVKRY VNEINIQPAA  60
FCKETNVIAA TIAKNRKRSV GDIPQKPAKR FTPQSTTNGR KFRGVRQRPW GKWAAEIRDP  120
ARRVRLWLGT YDTAEEAARV YDNAAIKLRG PDALTNFITP PSREDDQEEE KSSPVEESEE  180
KKPEINVEAV SGSGYESADE SHSLSSPKSV LTYRLPSAES HKPPSQPFQE AKMEPKPQDN  240
EEAFGESNLS DYLPLDSPFL DDFFNFGTSG PTLFDDQVLA TTTTATSIFQ ESIMCDQDFG  300
DIFLDPLQDF TSLPSVCQED DDFFHFLNSE PLTAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2099157362ATERF1
3gcc_A4e-2099157362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001929.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
RefseqXP_011016600.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLA0A2K1Y8600.0A0A2K1Y860_POPTR; Uncharacterized protein
STRINGPOPTR_0012s01260.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-64cytokinin response factor 4