PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG022907.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

SRS

Protein Properties

Length: 373aa MW: 41952.2 Da PI: 9.0767

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG022907.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	26	2.7e-08	42	77	5	40
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvk 40 + +C +CGn a+ C ++ C+ CC C+ hv CCG022907.1 42 KPKCIQCGNVARSRCPYQSCKSCCSRAQNPCHIHVL 77 568*******************99999***94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.1E-5	44	86	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MAASSPVMSN NSSDTGQTSI STAAGGTVSF SAPPKTLRGL NKPKCIQCGN VARSRCPYQS 60 CKSCCSRAQN PCHIHVLKAN ATFPDKSPAS SAPLFEQQVN EAPPAVSSHR AASLRQLSSN 120 FSQFNNLHSP LRSRKPLTRK EAAAINEWRF SKLKEFRDRN IEVENEAFDR YMHNISLLEE 180 VFSLKSFLKG FTEDEPLSSN YDHASAKEDT EEKMVSEQKL KLRSNLSRSV NNRKRLQQIV 240 DVGLKKLQKL ELNNGSVNNQ KELDEGPERA KSLRAERASA LSDLMDKLNK ARNEEDLKSC 300 SETKAQLYSH HARSRTEIKD FEVLREQTAK KDVAPQKEMD FFSQKLFRAV EIDREALTSI 360 DAHFSSLEKI EDL

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MAASSPVMSN NSSDTGQTSI STAAGGTVSF SAPPKTLRGL NKPKCIQCGN VARSRCPYQS  60
CKSCCSRAQN PCHIHVLKAN ATFPDKSPAS SAPLFEQQVN EAPPAVSSHR AASLRQLSSN  120
FSQFNNLHSP LRSRKPLTRK EAAAINEWRF SKLKEFRDRN IEVENEAFDR YMHNISLLEE  180
VFSLKSFLKG FTEDEPLSSN YDHASAKEDT EEKMVSEQKL KLRSNLSRSV NNRKRLQQIV  240
DVGLKKLQKL ELNNGSVNNQ KELDEGPERA KSLRAERASA LSDLMDKLNK ARNEEDLKSC  300
SETKAQLYSH HARSRTEIKD FEVLREQTAK KDVAPQKEMD FFSQKLFRAV EIDREALTSI  360
DAHFSSLEKI EDL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011032005.1	0.0	PREDICTED: uncharacterized protein LOC105130965
TrEMBL	B9GM58	0.0	B9GM58_POPTR; Uncharacterized protein
STRING	POPTR_0003s08400.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7690	16	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	1e-107