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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG022758.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 553aa MW: 59989.4 Da PI: 6.6801 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97 | 1.2e-30 | 297 | 355 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ CCG022758.1 297 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 355 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-33 | 281 | 357 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.28E-27 | 289 | 357 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.516 | 291 | 357 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-36 | 296 | 356 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-26 | 298 | 355 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 553 aa Download sequence Send to blast |
MDHSRNNNMF QFPGSLSAGQ DQQPPSAAHE VDFFKEKINK VGDDDSETTS VIVKKENSIA 60 ELAPGSTRTA LDVNTGLHLL TANSRSDQST VDDGVSSDVD DKRSKNNEKL AQLQMELQKM 120 NTENQRLKDM LGHVTTSYSA LQMHFAALMQ QHQQQNHGKE SNKEEENIVQ GKPSEEKKHE 180 DVVVPRQFMD LGPSAETDEL SNSSSDERTR SGTPQNHIEV ASAKNNGKLP YDQENSSFRD 240 GKRIGREESP ESESQAWKVQ KTDPASPANK AIEQSTEATM RKARVSVRAR SEAPMITDGC 300 QWRKYGQKMA KGNPCPRAYY RCTMAVGCPV RKQVQRCAED RTILITTYEG NHNHPLPPAA 360 MAMASTTAAA ASMLLSGSMS SADGIMNPNL LARAILPAGS SNMATISASA PFPTVTLDLT 420 HNPNPLQFQR PPPQFQVPFP GQPQNFSSVT APQLPQVFGQ ALYNQSKFSG LQLSQEIGTP 480 QLGQQAQPHL LHSGQQPSLS QDTLSAATAA ITADPNFTAA LAAAISSIIG GANSNTTNNN 540 NNSNATNNTS HRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-22 | 283 | 359 | 1 | 76 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011008019.1 | 0.0 | PREDICTED: probable WRKY transcription factor 31 isoform X1 | ||||
Refseq | XP_011008022.1 | 0.0 | PREDICTED: probable WRKY transcription factor 31 isoform X3 | ||||
Swissprot | Q9C519 | 1e-158 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A2K1YDZ9 | 0.0 | A0A2K1YDZ9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0021s00280.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-132 | WRKY family protein |