PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019903.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 268aa    MW: 29845.5 Da    PI: 7.8459
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019903.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31e-19131180255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa+a+++a+  ++g
  CCG019903.1 131 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFSTAEEAARAYDRAAIDFRG 180
                  59*******.**********82....48**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.6E-14131180IPR001471AP2/ERF domain
PROSITE profilePS5103225.211131188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-32131188IPR001471AP2/ERF domain
SMARTSM003801.1E-37131194IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22131189IPR016177DNA-binding domain
CDDcd000184.16E-34131188No hitNo description
PRINTSPR003674.1E-12132143IPR001471AP2/ERF domain
PRINTSPR003674.1E-12154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MQRPSKRSKI GEAPAATLFS LPEISPMRLT HDQESAVMVA ALRNVVSGTS SSDLSSELNS  60
LNVPITTSNS QFGSRSSNGN GFCISIWPPS SDLDTCAVCK IKGCLGCDFF PPNPEDKKDD  120
KKGKRKRVKK NYRGVRQRPW GKWAAEIRDP RRAARVWLGT FSTAEEAARA YDRAAIDFRG  180
PRAKLNFPFP DSGISSFEES KEKQEKQAKQ EEISEKRSGF EAEMEKESEF WDKIGEDEIH  240
EWMMMMLDFS NGDSSDSTGT ARAATIGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23130189464ATERF1
3gcc_A2e-23130189464ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006490.10.0PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLB9N4Y01e-162B9N4Y0_POPTR; ERF family protein
STRINGPOPTR_0004s14840.11e-163(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-33redox responsive transcription factor 1