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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG019590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 597aa MW: 65088.3 Da PI: 6.461 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 56.1 | 7.4e-18 | 339 | 375 | 2 | 37 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 +Dg++WrKYGqK kg+++pr+YYrCt+a gCpv+k+ CCG019590.1 339 SDGCQWRKYGQKIAKGNPCPRAYYRCTMAaGCPVRKQ 375 7***************************99******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.2E-27 | 323 | 412 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.75E-20 | 332 | 412 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.72 | 333 | 412 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.7E-27 | 338 | 411 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-23 | 340 | 410 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 597 aa Download sequence Send to blast |
MAKGSGGLSI DSDPIATSGF FLHKPTVPAS FPEENINPKW KQLAATGARQ SMDVKATRSP 60 PNFQFPVKLI NTNEHDHDHD HDPDSSLPSD NRRRTVIDEM DFFADKKHDI DRMTIINNGT 120 GDLKDSGSPA GLELNVNTGL NLLTTNTSGE QSTVDDGLSS NMEDKRAKSE LAVLRAEVER 180 MKVENLRLKD MLTHVTSNYN ALQMDLVALM QDQNSHHKNE QHDGKNKDNG IVPRQFMDLG 240 LVAATGDGDT DDLSLSTSEG RRRDRSRSSG NNAENNNEDG TVFEQDKKGT DQREESPDQV 300 WGSNKDARFN SKKTVDQTEA TIRKARVSVR ARSEDATISD GCQWRKYGQK IAKGNPCPRA 360 YYRCTMAAGC PVRKQACFPL FLLIIRHHVQ RCAEDRTILT TTYEGNHSHP LPPAATAMAS 420 TTSSAARMLL SGSMSSTDGQ MNSNFLTRTI LPCSSSLATI SASAPFPTVT LDLTQNPSPL 480 QLLKQPIQFQ VPFPNPPQNL ANASAAALLP QILGQALYNQ SKSSGLQMSQ DMQPNRLGHQ 540 SQPALQQGQQ NSLADNFTTA TAAIAADPNF TAALAAAITS IIESKKGSNE GRDEVES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-19 | 325 | 414 | 1 | 76 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011006460.1 | 0.0 | PREDICTED: probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-133 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A2K2BN03 | 0.0 | A0A2K2BN03_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s21330.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-104 | WRKY family protein |