PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG019256.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 246aa MW: 27941.1 Da PI: 5.6723 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 145.4 | 3.2e-45 | 4 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp G+rF Pt+eel+++yL++k+ g + e ++vi+++ iy++ePwdLpk ++a++++w+fF++r++++a+g r+nr+t+sgyWkatg+ v+ CCG019256.1 4 LPLGYRFYPTEEELISFYLHNKLGGGRQESlQRVIPDISIYDIEPWDLPKlsgeLCQADTEQWFFFTPRQEREARGGRPNRTTASGYWKATGSPGYVY 101 699********************99996551567***************657765566788************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s++++++glkkt+vfy+g+ap+g+kt+W m+eyr+ CCG019256.1 102 SSDNRVIGLKKTMVFYTGKAPSGRKTKWKMNEYRA 136 *********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.85E-49 | 3 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.124 | 4 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-23 | 5 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MEELPLGYRF YPTEEELISF YLHNKLGGGR QESLQRVIPD ISIYDIEPWD LPKLSGELCQ 60 ADTEQWFFFT PRQEREARGG RPNRTTASGY WKATGSPGYV YSSDNRVIGL KKTMVFYTGK 120 APSGRKTKWK MNEYRAIEVH ESSSNATPKL RHEFSLCRVY VVSGSFRAFD RRPLEAVTRE 180 TQLHGEGATT SARGPDPTVD MTSSPETSYS LEDHVDHPWT AASANWGAVD GLEPPAWEWP 240 GQLDWP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-37 | 4 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-37 | 4 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-37 | 4 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-37 | 4 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-37 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swm_B | 5e-37 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swm_C | 5e-37 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swm_D | 5e-37 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swp_A | 5e-37 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swp_B | 5e-37 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swp_C | 5e-37 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
3swp_D | 5e-37 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
4dul_A | 5e-37 | 4 | 160 | 17 | 163 | NAC domain-containing protein 19 |
4dul_B | 5e-37 | 4 | 160 | 17 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011006062.1 | 0.0 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 4e-92 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2K2C1M7 | 1e-176 | A0A2K2C1M7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s22630.1 | 1e-176 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 3e-96 | NAC domain containing protein 61 |
Publications ? help Back to Top | |||
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