PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017754.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 504aa    MW: 55480.7 Da    PI: 6.5207
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017754.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11359405455
                  HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I +Lq
  CCG017754.1 359 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITFITDLQ 405
                  799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.7E-4448232IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.259355404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.71E-14358409No hitNo description
SuperFamilySSF474597.07E-18358427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16359425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-9359405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-14361410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MGEKFWVNGE KGMVESVLGV EACEFLITSA SKNLSNDLVS PPVSLGVQQG LVQLAEGFNW  60
SYAIFWHASG LKTGGSILVW GDGICRDPKG QGIGDGSSSG DGKLEGAEKR KEVKKRVLQK  120
LHMCFNGTND DNFAASLDEV SDVEMFYLTS MYFTFPCDST YGPGEAYQSG RSIWALGMPS  180
CLGHYQLRSV LARSAGFQTV VFLPVKSGVL ELGSVKSIPE QHDFVEKARS IFGASNTAQA  240
KAAPKIFGRE LSLVSSKSRS ISINFSPKVE DELIFTSEPY TMQAMSTDQD YGSTFSGHPS  300
DKNEAKLFPH LNQTIVGFNA DTLVGGLEQP KDDLSPQGDE RKPRKRGRKP ANGREEPLNH  360
VEAERQRREK LNQRFYALRA VVPNISKMDK ASLLGDAITF ITDLQKKIRV LETERGMVNN  420
NQKQLPVPEI DFQPRQDDAV VRASCPMESH PVSTIIETFR EHQITAQDCN MSVEGDKIVH  480
TFSIRTQGGA ADQLKEKLEA ALSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-27353425274Transcription factor MYC2
5gnj_B3e-27353425274Transcription factor MYC2
5gnj_E3e-27353425274Transcription factor MYC2
5gnj_F3e-27353425274Transcription factor MYC2
5gnj_G3e-27353425274Transcription factor MYC2
5gnj_I3e-27353425274Transcription factor MYC2
5gnj_M3e-27353425274Transcription factor MYC2
5gnj_N3e-27353425274Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340348RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026018.10.0PREDICTED: transcription factor bHLH3-like
SwissprotA0A3Q7H2160.0MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A2K2AKL70.0A0A2K2AKL7_POPTR; Uncharacterized protein
STRINGPOPTR_0005s24240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-169bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]