PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG017734.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 26912.7 Da PI: 4.9568 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.3e-18 | 108 | 157 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd + ng r++lg+f+t e Aa a+++a+++l+g CCG017734.1 108 YRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDTGETAALAYDQAALSLHG 157 9*******.**********44465..*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-29 | 107 | 166 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-22 | 107 | 166 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.8E-35 | 107 | 171 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.919 | 107 | 165 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-12 | 108 | 157 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-10 | 108 | 119 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.11E-27 | 108 | 166 | No hit | No description |
PRINTS | PR00367 | 3.3E-10 | 131 | 147 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MDHSFFNHPN LEFSPSSPSS SLDLLQDDLL FNPHDDYFYL FNSNDSGETL PSDVPFTEAI 60 ESATSFTSDV PPNNKTNDLS ELISSNEIEE KEAAPNAKEE NPGREKTYRG VRKRPWGKYA 120 AEIRDSTRNG VRVWLGTFDT GETAALAYDQ AALSLHGSKA VLNFPIEKVR KSLREMKSGL 180 EDQYWCSPAE ALKKTHSKRR AGSRKGKGKG NGLATKEVVV FEDLGADYLE ELLSSCERGT 240 PQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-26 | 106 | 167 | 4 | 65 | ATERF1 |
3gcc_A | 5e-26 | 106 | 167 | 4 | 65 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011025993.1 | 1e-180 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 3e-52 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | B9H8L2 | 1e-151 | B9H8L2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s24470.1 | 1e-152 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17133 | 3 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23240.1 | 2e-47 | ethylene response factor 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|