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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG017295.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bZIP | ||||||||
Protein Properties | Length: 155aa MW: 17343.4 Da PI: 8.983 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 48.7 | 1.6e-15 | 30 | 88 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +r+++NRe+ArrsR RK++ ++ L v++L++eN++ + ++ ++++ ++++++ CCG017295.1 30 RKRKRMISNRESARRSRMRKQKHLDDLVAQVAQLKKENHQIITSINITTQHYLNVEADN 88 6789****************************************999999998887766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.5E-11 | 20 | 74 | No hit | No description |
SMART | SM00338 | 2.4E-19 | 26 | 90 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.14 | 28 | 75 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.1E-12 | 30 | 80 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.88E-13 | 30 | 82 | No hit | No description |
CDD | cd14702 | 7.00E-21 | 31 | 81 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 33 | 48 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MASSSGTSSG SSLIQNSGSE ENLQALMDQR KRKRMISNRE SARRSRMRKQ KHLDDLVAQV 60 AQLKKENHQI ITSINITTQH YLNVEADNSI LRAQVSELSH RLEFLNGIIS LLNSSNGLFG 120 DSSIFNEPAP DSFLNPLNMS YLNQPISASA DMFQY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 50 | RKRKRMISNRESARRSRMRKQK |
2 | 42 | 49 | RRSRMRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146155 | 0.0 | EF146155.1 Populus trichocarpa clone WS0115_N18 unknown mRNA. | |||
GenBank | EF147315 | 0.0 | EF147315.1 Populus trichocarpa clone WS0122_J03 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011047964.1 | 1e-109 | PREDICTED: ocs element-binding factor 1-like | ||||
Swissprot | C0Z2L5 | 3e-50 | BZP44_ARATH; bZIP transcription factor 44 | ||||
TrEMBL | A9PCZ7 | 1e-106 | A9PCZ7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s12250.1 | 1e-107 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF613 | 34 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34590.1 | 3e-50 | G-box binding factor 6 |
Publications ? help Back to Top | |||
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