PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017116.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 284aa    MW: 32820.9 Da    PI: 9.6096
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017116.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.81.6e-47111373128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 
                  pGfrFhPt+eel+++yLk+ v gkk++l +vi  ++iy+++PwdLp   + +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d++++s    ++
  CCG017116.2  11 PGFRFHPTEEELLDFYLKNIVFGKKMRL-DVIGCLNIYHHDPWDLPGLSNVGEREWYFFVPRDRKHGSGGRPNRTTQNGFWKATGSDRKIVSLsdPKR 107
                  9**************************9.99***************8777899*************************************99766677 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                   +gl+ktLvfykgrap+g+ktdWvm+eyrl
  CCG017116.2 108 MIGLRKTLVFYKGRAPRGNKTDWVMNEYRL 137
                  8***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.4639156IPR003441NAC domain
SuperFamilySSF1019418.11E-5510156IPR003441NAC domain
PfamPF023655.3E-2511137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAEMALKLDL PGFRFHPTEE ELLDFYLKNI VFGKKMRLDV IGCLNIYHHD PWDLPGLSNV  60
GEREWYFFVP RDRKHGSGGR PNRTTQNGFW KATGSDRKIV SLSDPKRMIG LRKTLVFYKG  120
RAPRGNKTDW VMNEYRLPEY SRPLPKGIVL CKIYRKATSL KVLEQRAAME EEMKTTHASP  180
PASPPPSSLD TMSFCSQLED PVPPILMPAQ NLVFKKEIVD NNNTRHEKPN EIKRPSLQLP  240
MGKDMLPELQ VPSKLSMEWN QDPIWSLNSP WIQNFAHYAD ILNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-441116122173NAC domain-containing protein 19
3swm_B3e-441116122173NAC domain-containing protein 19
3swm_C3e-441116122173NAC domain-containing protein 19
3swm_D3e-441116122173NAC domain-containing protein 19
3swp_A3e-441116122173NAC domain-containing protein 19
3swp_B3e-441116122173NAC domain-containing protein 19
3swp_C3e-441116122173NAC domain-containing protein 19
3swp_D3e-441116122173NAC domain-containing protein 19
3ulx_A3e-4421379140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2248830.0CU224883.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045280.10.0PREDICTED: protein FEZ-like
SwissprotQ10S657e-94NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A2K1Z7R90.0A0A2K1Z7R9_POPTR; Uncharacterized protein
STRINGPOPTR_0009s14370.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62143251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-106NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]