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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
CCG016780.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
NAC |
| Protein Properties |
Length: 336aa MW: 37945.9 Da PI: 8.2676 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| CCG016780.1 | genome | LZU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 161.2 | 4.1e-50 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97
l pGfrFhPtd+el+ +yL+kkv++++le+ +i++vdiyk++Pw+Lp k+ +e+ew+fFs+rd+ky++g r+nra+ sgyWkatg+dk++l++ ++
CCG016780.1 6 LLPGFRFHPTDQELIIHYLRKKVSSSNLEV-VIIADVDIYKFNPWELPGKALFGETEWFFFSPRDRKYPNGARPNRAAGSGYWKATGTDKPILTSnGS 102
579*************************99.77***************8777899**************************************99556 PP
NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128
+ g+kk Lvfykgr pkg kt+W+m eyrl
CCG016780.1 103 QCLGVKKALVFYKGRPPKGMKTSWLMLEYRL 133
669**************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 336 aa
Download sequence Send
to blast |
MCSPELLPGF RFHPTDQELI IHYLRKKVSS SNLEVVIIAD VDIYKFNPWE LPGKALFGET 60
EWFFFSPRDR KYPNGARPNR AAGSGYWKAT GTDKPILTSN GSQCLGVKKA LVFYKGRPPK 120
GMKTSWLMLE YRLLDDTHHL HRLRGSMRLD DWVLCRVRQK SNTRPQNGDD HGNNFSSFSP 180
FTSLRCLQGQ EIFQKGNTLK DYYYDLQPCL TAPAESEEAD EQGQAEFQEV SPEYSISGSD 240
SSSQPTMVSS VKEKLEYIKK ILSIGALEEL VPTTPKKRLH VSSSNNAENA CIFDKLPSLP 300
KKRLHIFSSN KAENECIFEV SSPTLSASSQ QSFQGS
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-66 | 6 | 163 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-66 | 6 | 163 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-66 | 6 | 163 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-66 | 6 | 163 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-66 | 6 | 163 | 20 | 171 | NAC domain-containing protein 19 |
| 3swm_B | 1e-66 | 6 | 163 | 20 | 171 | NAC domain-containing protein 19 |
| 3swm_C | 1e-66 | 6 | 163 | 20 | 171 | NAC domain-containing protein 19 |
| 3swm_D | 1e-66 | 6 | 163 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_A | 1e-66 | 6 | 163 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_B | 1e-66 | 6 | 163 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_C | 1e-66 | 6 | 163 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_D | 1e-66 | 6 | 163 | 20 | 171 | NAC domain-containing protein 19 |
| 4dul_A | 1e-66 | 6 | 163 | 17 | 168 | NAC domain-containing protein 19 |
| 4dul_B | 1e-66 | 6 | 163 | 17 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC184083 | 0.0 | AC184083.2 Populus trichocarpa clone Pop1-56J5, complete sequence. |
