PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG016780.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 336aa MW: 37945.9 Da PI: 8.2676

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG016780.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.2	4.1e-50	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 l pGfrFhPtd+el+ +yL+kkv++++le+ +i++vdiyk++Pw+Lp k+ +e+ew+fFs+rd+ky++g r+nra+ sgyWkatg+dk++l++ ++ CCG016780.1 6 LLPGFRFHPTDQELIIHYLRKKVSSSNLEV-VIIADVDIYKFNPWELPGKALFGETEWFFFSPRDRKYPNGARPNRAAGSGYWKATGTDKPILTSnGS 102 579***********************99.77***********8777899**********************************99556 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + g+kk Lvfykgr pkg kt+W+m eyrl CCG016780.1 103 QCLGVKKALVFYKGRPPKGMKTSWLMLEYRL 133 669************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-61	3	160	IPR003441	NAC domain
PROSITE profile	PS51005	58.486	6	160	IPR003441	NAC domain
Pfam	PF02365	1.3E-24	8	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MCSPELLPGF RFHPTDQELI IHYLRKKVSS SNLEVVIIAD VDIYKFNPWE LPGKALFGET 60 EWFFFSPRDR KYPNGARPNR AAGSGYWKAT GTDKPILTSN GSQCLGVKKA LVFYKGRPPK 120 GMKTSWLMLE YRLLDDTHHL HRLRGSMRLD DWVLCRVRQK SNTRPQNGDD HGNNFSSFSP 180 FTSLRCLQGQ EIFQKGNTLK DYYYDLQPCL TAPAESEEAD EQGQAEFQEV SPEYSISGSD 240 SSSQPTMVSS VKEKLEYIKK ILSIGALEEL VPTTPKKRLH VSSSNNAENA CIFDKLPSLP 300 KKRLHIFSSN KAENECIFEV SSPTLSASSQ QSFQGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-66	6	163	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-66	6	163	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-66	6	163	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-66	6	163	17	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-66	6	163	20	171	NAC domain-containing protein 19
3swm_B	1e-66	6	163	20	171	NAC domain-containing protein 19
3swm_C	1e-66	6	163	20	171	NAC domain-containing protein 19
3swm_D	1e-66	6	163	20	171	NAC domain-containing protein 19
3swp_A	1e-66	6	163	20	171	NAC domain-containing protein 19
3swp_B	1e-66	6	163	20	171	NAC domain-containing protein 19
3swp_C	1e-66	6	163	20	171	NAC domain-containing protein 19
3swp_D	1e-66	6	163	20	171	NAC domain-containing protein 19
4dul_A	1e-66	6	163	17	168	NAC domain-containing protein 19
4dul_B	1e-66	6	163	17	168	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC184083	0.0	AC184083.2 Populus trichocarpa clone Pop1-56J5, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011001235.1	0.0	PREDICTED: NAC domain-containing protein 72-like
TrEMBL	B9I146	0.0	B9I146_POPTR; Uncharacterized protein
STRING	POPTR_0011s05760.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17817	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	6e-73	NAC domain containing protein 2