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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG016540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 314aa MW: 35167 Da PI: 5.3155 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.5e-18 | 82 | 130 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ ++ ++g CCG016540.1 82 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARIIRG 130 9*******.**********954...4*******************99988887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.8E-32 | 81 | 139 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.169 | 81 | 138 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 81 | 139 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.0E-37 | 81 | 144 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-12 | 82 | 93 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.22E-32 | 82 | 139 | No hit | No description |
Pfam | PF00847 | 1.2E-11 | 82 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-12 | 104 | 120 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MCGGAILADI IPRNRGRREA ASQFWPNSCF DKLGPFESSL SQASNQEESF TLKRPQPQPA 60 SETGGLEQVE KPNAKRQRKN LYRGIRQRPW GKWAAEIRDP RKGVRVWLGT FNTAEEAARA 120 YDREARIIRG KKAKVNFPNE DEHYSSSQNS TTKPPMYQNP TCHFSKGYDF GYGSGMNQVR 180 SYSSNGFNGQ PIVASGEDDS GSASEEVTRL VGCNQNVKSN IYMGQVKLEV EEKQEKVNNK 240 EVVVVDLGTG EEENEVQQLT EELIAYENYM KFYQIPYLDG QSMAPNGSTQ ENLVANLWNF 300 DDVCVAPPVT SAPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-21 | 82 | 138 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 2e-21 | 82 | 140 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011015854.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X1 | ||||
TrEMBL | B9GSD4 | 0.0 | B9GSD4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s20270.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6771 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 1e-33 | ethylene-responsive element binding protein |