PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG016284.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB_related

Protein Properties

Length: 1120aa MW: 124280 Da PI: 7.5427

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG016284.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.4	3.2e-08	5	37	3	37
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 W +eE e++++a +++G++ W+++a+ + +R+ CCG016284.2 5 QWGKEELEQFYKAYRKHGKD-WEKVAAVVR-NRSV 37 6***************99.******9.9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	11.791	1	52	IPR017884	SANT domain
SMART	SM00717	4.0E-5	2	50	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.26E-9	4	51	IPR009057	Homeodomain-like
Pfam	PF00249	3.5E-7	5	39	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.5E-4	5	36	IPR009057	Homeodomain-like
CDD	cd00167	7.51E-6	6	48	No hit	No description
SMART	SM01135	2.2E-51	579	680	IPR033471	DIRP domain
Pfam	PF06584	4.2E-31	579	679	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1120 aa Download sequence Send to blast
MLGPQWGKEE LEQFYKAYRK HGKDWEKVAA VVRNRSVGMV EALYTMNKAY LSLPKGFASG 60 AGLIAMMTDH YSNLGESDSE LESNGGTGPS QKPQKRARVT KGSEAPPVLD LLQSQPAASN 120 YGCLSLLKKR RSGSKPWAVG KRTPRVPVTY SHDKDNEKYV SPIWQGMKVK ADAVDDDVAH 180 EIALALTEAS QRGGSPQVSQ TPKRKTKTPS PAQHDEQMHA ESEMMSAKLR GSEMDELGCE 240 LSLGSTDAYG GDYARDRIFW KGRRYHGRRS LEVEENLDNH LDDVREACSG TEEGQKLEAV 300 EEKIEMEVVY SKLVRSSKGS RKRSKKVLFG EVEDTDFDAL EALADLSLRL PETPVDTGLS 360 ASVEEEKTGI VVKSKLKGNR SSPGVKPISF KNTKHGKVFT HKVTSIPEAK EAPYQISPVM 420 RKRRQKPSPS KISENAKHAD SRLGESQKVE VTKDDDNFVS KGKCLQDAPY LKEGKLMKPA 480 ERTSSSNNHG RELNDSAPTT TRVLSSNQFN LPTKVRSSRK LNTPKLLIER DSKSSENIVN 540 SQSNTVIPSF QDRVPGLKGK LSNCLSRYLV RRWCVFEWFN SAIDYPWFAK REFVEYLEHV 600 GLAHIPRLTR VEWGVIRSSL GKPRRFSEQF LKEEKEKLYQ YRESVREHYA ELRAGTRDGL 660 PTDLARPLSV GQRILALHPR TSEIHDGSIL TVDHSRCCVQ FDRPELGVEF VMDVHCMPLN 720 PLENMPASMI GHNIALNRYI KNLNELKINV QPAEKMEEFK FSACVNLEGA SALPHTSPLT 780 YPCSDLLQQP KGGLLGSNTQ VNIGGETVGA QPSFCAQIQA KEADIYALSE LTRALDKKEA 840 VVSELKHMND EVMESQKRGD YSLKDSEVFK KHYAAVLLQL NEVNELVSSA LLCLRERNTY 900 QGNNPHLLLK PVANIDEPAC HSSCFNSSMD DTQESGSHAV EIVESSRTKA QTMVDAAMQA 960 MSSLKKEGSG IDSIEDAIDF VNNKLSADDL SVPAIRSSIP AISTQGTLAS QDQLSSCAVN 1020 PEAINDAPDA KFNNLSTQNE VQVPTELISH CVATLLMIQA SIRIFNRCTE RQFPPSDVAV 1080 VLDSAVTSLK PCCSTNLPIY AEIQKCMGII RNQILALIPT

Sequence ? help Back to Top

Protein Sequence Length: 1120 aa Download sequence Send to blast

MLGPQWGKEE LEQFYKAYRK HGKDWEKVAA VVRNRSVGMV EALYTMNKAY LSLPKGFASG  60
AGLIAMMTDH YSNLGESDSE LESNGGTGPS QKPQKRARVT KGSEAPPVLD LLQSQPAASN  120
YGCLSLLKKR RSGSKPWAVG KRTPRVPVTY SHDKDNEKYV SPIWQGMKVK ADAVDDDVAH  180
EIALALTEAS QRGGSPQVSQ TPKRKTKTPS PAQHDEQMHA ESEMMSAKLR GSEMDELGCE  240
LSLGSTDAYG GDYARDRIFW KGRRYHGRRS LEVEENLDNH LDDVREACSG TEEGQKLEAV  300
EEKIEMEVVY SKLVRSSKGS RKRSKKVLFG EVEDTDFDAL EALADLSLRL PETPVDTGLS  360
ASVEEEKTGI VVKSKLKGNR SSPGVKPISF KNTKHGKVFT HKVTSIPEAK EAPYQISPVM  420
RKRRQKPSPS KISENAKHAD SRLGESQKVE VTKDDDNFVS KGKCLQDAPY LKEGKLMKPA  480
ERTSSSNNHG RELNDSAPTT TRVLSSNQFN LPTKVRSSRK LNTPKLLIER DSKSSENIVN  540
SQSNTVIPSF QDRVPGLKGK LSNCLSRYLV RRWCVFEWFN SAIDYPWFAK REFVEYLEHV  600
GLAHIPRLTR VEWGVIRSSL GKPRRFSEQF LKEEKEKLYQ YRESVREHYA ELRAGTRDGL  660
PTDLARPLSV GQRILALHPR TSEIHDGSIL TVDHSRCCVQ FDRPELGVEF VMDVHCMPLN  720
PLENMPASMI GHNIALNRYI KNLNELKINV QPAEKMEEFK FSACVNLEGA SALPHTSPLT  780
YPCSDLLQQP KGGLLGSNTQ VNIGGETVGA QPSFCAQIQA KEADIYALSE LTRALDKKEA  840
VVSELKHMND EVMESQKRGD YSLKDSEVFK KHYAAVLLQL NEVNELVSSA LLCLRERNTY  900
QGNNPHLLLK PVANIDEPAC HSSCFNSSMD DTQESGSHAV EIVESSRTKA QTMVDAAMQA  960
MSSLKKEGSG IDSIEDAIDF VNNKLSADDL SVPAIRSSIP AISTQGTLAS QDQLSSCAVN  1020
PEAINDAPDA KFNNLSTQNE VQVPTELISH CVATLLMIQA SIRIFNRCTE RQFPPSDVAV  1080
VLDSAVTSLK PCCSTNLPIY AEIQKCMGII RNQILALIPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	419	424	MRKRRQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011044502.1	0.0	PREDICTED: protein ALWAYS EARLY 3-like isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A3N7FL22	0.0	A0A3N7FL22_POPTR; Uncharacterized protein
STRING	POPTR_0008s22660.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]