PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG015099.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WRKY

Protein Properties

Length: 472aa MW: 51042 Da PI: 7.2517

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG015099.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	78.9	5.7e-25	246	300	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK kg+++pr+YYrCt+a gCpv +r+aed +++++tYeg+Hnh+ CCG015099.1 246 SDGCQWRKYGQKLAKGNPCPRAYYRCTMAaGCPV----QRCAEDRTILITTYEGNHNHP 300 7*************************9995....67999***************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.8E-27	230	302	IPR003657	WRKY domain
SuperFamily	SSF118290	8.63E-23	239	302	IPR003657	WRKY domain
PROSITE profile	PS50811	24.65	240	302	IPR003657	WRKY domain
SMART	SM00774	4.8E-29	245	301	IPR003657	WRKY domain
Pfam	PF03106	5.1E-21	247	300	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MDFFARKKHD DGYPITNNST DDLKDSGSPA RLELNVNTGL NLLTTNTSSD QSMVDDGISS 60 NMEDKRAKSE LQLAVLQAEV ERMKVENLRL KGMLNQVTSN YNALQMHLVT LTQDQKSHHK 120 NEQHDGKNKN NGMVPRQFMD LGLVAAAAGD TDDLSLSTSE GGRSRDRSRS PGNNVENNNE 180 DGTLMFDQDK KGFARGADHR EDSPGQGWAS NKVARLNSAK TIDQTEATIR KARVSVRARS 240 EDAMISDGCQ WRKYGQKLAK GNPCPRAYYR CTMAAGCPVQ RCAEDRTILI TTYEGNHNHP 300 LPPAAMAMAS TTSSAARMLL SGSMSSADGL LNSNFLTRSL LPCSSNLATI SASAPFPTVT 360 LDLTQNPNPL QLPKQPTQFQ FPFPNAPQDP ANASATALLP QIFGQALYNQ SKFSGLQMSQ 420 DMEPHRLGQQ SQPASQQNPL ADSLAAATAV IAADPNFTAA LAAAITSIIG GR

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MDFFARKKHD DGYPITNNST DDLKDSGSPA RLELNVNTGL NLLTTNTSSD QSMVDDGISS  60
NMEDKRAKSE LQLAVLQAEV ERMKVENLRL KGMLNQVTSN YNALQMHLVT LTQDQKSHHK  120
NEQHDGKNKN NGMVPRQFMD LGLVAAAAGD TDDLSLSTSE GGRSRDRSRS PGNNVENNNE  180
DGTLMFDQDK KGFARGADHR EDSPGQGWAS NKVARLNSAK TIDQTEATIR KARVSVRARS  240
EDAMISDGCQ WRKYGQKLAK GNPCPRAYYR CTMAAGCPVQ RCAEDRTILI TTYEGNHNHP  300
LPPAAMAMAS TTSSAARMLL SGSMSSADGL LNSNFLTRSL LPCSSNLATI SASAPFPTVT  360
LDLTQNPNPL QLPKQPTQFQ FPFPNAPQDP ANASATALLP QIFGQALYNQ SKFSGLQMSQ  420
DMEPHRLGQQ SQPASQQNPL ADSLAAATAV IAADPNFTAA LAAAITSIIG GR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-19	232	304	1	76	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269\|PubMed:12000796, ECO:0000269\|PubMed:25733771}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:11722756}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147673	0.0	EF147673.1 Populus trichocarpa clone WS0124_D24 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011047237.1	0.0	PREDICTED: probable WRKY transcription factor 31 isoform X1
Swissprot	Q9C519	1e-134	WRKY6_ARATH; WRKY transcription factor 6
TrEMBL	A0A2K1XWC2	0.0	A0A2K1XWC2_POPTR; Uncharacterized protein
STRING	POPTR_0014s15320.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF866	34	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-105	WRKY family protein

Publications ? help Back to Top
Zhou F, et al. High humidity suppresses ssi4-mediated cell death and disease resistance upstream of MAP kinase activation, H2O2 production and defense gene expression. Plant J., 2004. 39(6): p. 920-32 [PMID:15341634] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P An extracellular subtilase switch for immune priming in Arabidopsis. PLoS Pathog., 2013. 9(6): p. e1003445 [PMID:23818851] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Chai J,Liu J,Zhou J,Xing D Mitogen-activated protein kinase 6 regulates NPR1 gene expression and activation during leaf senescence induced by salicylic acid. J. Exp. Bot., 2014. 65(22): p. 6513-28 [PMID:25210078] Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress. Plant Cell, 2014. 26(12): p. 4656-79 [PMID:25549671] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Bakshi M, et al. WRKY6 restricts Piriformospora indica-stimulated and phosphate-induced root development in Arabidopsis. BMC Plant Biol., 2015. 15: p. 305 [PMID:26718529] Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development. PLoS Genet., 2016. 12(2): p. e1005833 [PMID:26829043] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis. PLoS Pathog., 2016. 12(11): p. e1006003 [PMID:27806116] Li H, et al. BZR1 Positively Regulates Freezing Tolerance via CBF-Dependent and CBF-Independent Pathways in Arabidopsis. Mol Plant, 2017. 10(4): p. 545-559 [PMID:28089951] Stetter MG,Benz M,Ludewig U Increased root hair density by loss of WRKY6 in Arabidopsis thaliana. PeerJ, 2017. 5: p. e2891 [PMID:28149680] Zhou X, et al. StMYB44 negatively regulates phosphate transport by suppressing expression of PHOSPHATE1 in potato. J. Exp. Bot., 2017. 68(5): p. 1265-1281 [PMID:28338870] Bakshi M, et al. Piriformospora indica Reprograms Gene Expression in Arabidopsis Phosphate Metabolism Mutants But Does Not Compensate for Phosphate Limitation. Front Microbiol, 2017. 8: p. 1262 [PMID:28747898] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486]