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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG014661.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 418aa MW: 45849.4 Da PI: 6.65 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.2 | 3.6e-17 | 54 | 103 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a++ ++g CCG014661.1 54 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDYAARVMRG 103 59*******.**********93....35999*******************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.54E-21 | 54 | 111 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.1E-31 | 54 | 117 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-10 | 54 | 103 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.8E-29 | 54 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.01 | 54 | 111 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.34E-28 | 54 | 110 | No hit | No description |
PRINTS | PR00367 | 2.5E-9 | 55 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-9 | 77 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MEEALRRLNG VPSHMPESNS YEPIIADMQK KSAPTTTTNK RSLKEGGGNS GNMRYRGVRR 60 RPWGRYAAEI RDPQSKERRW LGTFDTAEEA ACAYDYAARV MRGIKARTNF VYPETYSATT 120 DSHNLLPPFT FSKSSHHQPS RQYNTVPSSN WSSLGHSHVG DFSAGGSAPQ KSTSGTSANT 180 STLNMLFLRD FVNSSSGSSS QNHSQPLYDH FPCINGSSYS GPSTFAVGSL ANPSSNISST 240 GPYNFSGTLA EDSTVTSLPY MEFNQNYTPG VLNSPNSKAE ELEFFPQEPS GSGLLQEIIQ 300 GFLPKHSTEK IDFSKSYGES MVAPSAEIIS GGQSLDGLRR STKYFVKNEH HGAYLDHEGI 360 KSSGQPEGCY RTGVSCLDQV SYDNEMSLNL AVGQDSFMED IFQYPDLMSA FAARFRNA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-18 | 55 | 110 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 4e-18 | 43 | 117 | 1 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011045255.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ESR2-like | ||||
TrEMBL | A0A2K1YNX2 | 0.0 | A0A2K1YNX2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s05670.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4100 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 9e-18 | DORNROSCHEN-like |