PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

CCG012036.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

M-type_MADS

Protein Properties

Length: 194aa MW: 21984 Da PI: 9.7824

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG012036.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.4	5.8e-21	15	63	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krien+ r +tfskRr gi KKA+EL +LC+aevav++fs+ gk + + CCG012036.1 15 KRIENEDDRLITFSKRRSGIYKKASELVTLCGAEVAVLVFSPAGKAFSF 63 79******************************************97766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.6E-29	7	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.679	7	67	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.31E-31	8	76	No hit	No description
SuperFamily	SSF55455	2.62E-26	8	80	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.1E-20	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-23	16	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.1E-20	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.1E-20	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MEGKQTRGRQ KIAIKRIENE DDRLITFSKR RSGIYKKASE LVTLCGAEVA VLVFSPAGKA 60 FSFGHPSIES VANRFLGQNI APNDKTQPLV EAHRKVRINE LNQQHNELLS EVEAERDRGK 120 LLKEGKSEKS SQGWWEVPID ELSLQELKQM NVMLEEFHKN LYKKINELRR NGGASSSSFQ 180 AHTGHATNIP FCQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mnm_A	5e-14	5	84	14	99	PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B	5e-14	5	84	14	99	PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011015022.1	1e-142	PREDICTED: agamous-like MADS-box protein AGL61
TrEMBL	A0A2K2ATX5	1e-135	A0A2K2ATX5_POPTR; Uncharacterized protein
STRING	POPTR_0004s13590.1	1e-117	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	2e-39	AGAMOUS-like 61