PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 730aa MW: 85284 Da PI: 4.8529

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG011494.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.5	4e-22	122	205	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAk++GF +r+++s ++++++e + ++C++eg++++++ + ++r+etrtgC a+l++++ ++++w+v++++leHnH + CCG011494.1 122 NYYNCYAKDLGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTSKEAH-----SRRKETRTGCLAMLRLRLVESNRWRVDEVKLEHNHLF 205 69**************************************98877.....8999*****************************77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-19	122	205	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-30	327	418	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.878	612	648	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-5	623	650	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence Send to blast
MIEIEEGSQN SEQILEEEGD HLEFNSNDLE IEGDNPGIDD NDLGIEDNFE LEDKNLENEG 60 HDLHEGNDLE DNCEQLFDIE YHVLENNRDD ATVDVQNDDF LGKDYPPPFV GMEFESYDDA 120 YNYYNCYAKD LGFAIRVKSS WTKRNSKEKR GAVLCCNCEG FKTSKEAHSR RKETRTGCLA 180 MLRLRLVESN RWRVDEVKLE HNHLFDPERA QNSKSHKKMD AGAKRKVEPT VDVEVRTIKL 240 YRTAAVDPLG YGSTNSNEGE SSQHVDRSKR LKLKKGDAQI IHNYFCQVQL TNPNFFYLMD 300 LNDEGFLRNV FWIDYRSRAA YGYFSDVVIF DTTCLLNKYE IPLFAFVGVN QHGRSILLGC 360 GLLVDETFET YIWLFRAWLT CMLGRPPQTI ITDQCKAMQS AIAEVFPRAH HRFCLSHVVL 420 KILDNLGTVQ DYEGFQRTLN VTIHDSLKVD EFEMAWEDMI QRFGIADNEW LRTCYEDRER 480 WVPVYSKDTC FAGISTFLKD ESTQFFNDYV NQQTTLKEFF DMNELVLQKK YQKEALDDFE 540 SRNSSPILRT GSFYELQLSK MYTNEIFRRF QDEVVMMSSC FGITQVHANG PLVTYVIKER 600 QGEENSRDIK NFEVMYDKRG AEVRCICSCF NFKGYLCRHA LCILNYNGVE EIPPLYILAR 660 WRKDLKRFYV LDSGSNNVDI ANPVQWFDHL YRRAMQVVEE GMISQDRYMV AWQAFKESLN 720 KVRLVAEKHL

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence Send to blast

MIEIEEGSQN SEQILEEEGD HLEFNSNDLE IEGDNPGIDD NDLGIEDNFE LEDKNLENEG  60
HDLHEGNDLE DNCEQLFDIE YHVLENNRDD ATVDVQNDDF LGKDYPPPFV GMEFESYDDA  120
YNYYNCYAKD LGFAIRVKSS WTKRNSKEKR GAVLCCNCEG FKTSKEAHSR RKETRTGCLA  180
MLRLRLVESN RWRVDEVKLE HNHLFDPERA QNSKSHKKMD AGAKRKVEPT VDVEVRTIKL  240
YRTAAVDPLG YGSTNSNEGE SSQHVDRSKR LKLKKGDAQI IHNYFCQVQL TNPNFFYLMD  300
LNDEGFLRNV FWIDYRSRAA YGYFSDVVIF DTTCLLNKYE IPLFAFVGVN QHGRSILLGC  360
GLLVDETFET YIWLFRAWLT CMLGRPPQTI ITDQCKAMQS AIAEVFPRAH HRFCLSHVVL  420
KILDNLGTVQ DYEGFQRTLN VTIHDSLKVD EFEMAWEDMI QRFGIADNEW LRTCYEDRER  480
WVPVYSKDTC FAGISTFLKD ESTQFFNDYV NQQTTLKEFF DMNELVLQKK YQKEALDDFE  540
SRNSSPILRT GSFYELQLSK MYTNEIFRRF QDEVVMMSSC FGITQVHANG PLVTYVIKER  600
QGEENSRDIK NFEVMYDKRG AEVRCICSCF NFKGYLCRHA LCILNYNGVE EIPPLYILAR  660
WRKDLKRFYV LDSGSNNVDI ANPVQWFDHL YRRAMQVVEE GMISQDRYMV AWQAFKESLN  720
KVRLVAEKHL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147781	1e-124	EF147781.1 Populus trichocarpa clone WS0124_P20 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011044860.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	U5GHZ0	0.0	U5GHZ0_POPTR; Uncharacterized protein
STRING	POPTR_0003s02550.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]