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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG011036.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 309aa MW: 35032.9 Da PI: 5.7755 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.5e-19 | 77 | 125 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ ++k++g CCG011036.1 77 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 125 9*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.48E-22 | 76 | 134 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.775 | 76 | 133 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-32 | 76 | 134 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-38 | 76 | 139 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-12 | 77 | 88 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.79E-33 | 77 | 134 | No hit | No description |
Pfam | PF00847 | 6.3E-12 | 77 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-12 | 99 | 115 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MCGGAILAGL IPRNRGQRVA ASEFWPNSCF NKPSPFDSYP SPLRNQEPFT LKRPQAPSGD 60 HEQVEKPNAK RQRKNLYRGI RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE EAARAYDREA 120 RKIRGKKAKV NFPNEDDHYH TSQNSNTKPF LYQAPTCHFS KGYDSGNVYD AYQIETYHSN 180 GLINEPIVTS GEDDSRSGSE EVAGLWGCNQ NVESNTYMSQ VKVEEEKLEK KVMKKEVVMV 240 DLENGEEESE VQKLTEELMA YENFMKFYQI PYVDGQSTTP NGTTQESLVG NLWSFFDDGV 300 DAPVASAPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-22 | 77 | 133 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 2e-21 | 77 | 135 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ544915 | 3e-58 | FJ544915.1 Citrus unshiu putative ethylene responsive element binding protein 2 (EREBP2) mRNA, complete cds. | |||
GenBank | FJ544916 | 3e-58 | FJ544916.1 Citrus unshiu putative ethylene responsive element binding protein 3 (EREBP3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011041915.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF071-like | ||||
TrEMBL | B9I9P1 | 0.0 | B9I9P1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s12090.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6771 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 4e-34 | ethylene-responsive element binding protein |