PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG008793.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bZIP | ||||||||
Protein Properties | Length: 320aa MW: 33564.8 Da PI: 6.5302 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 73.4 | 3.2e-23 | 221 | 283 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ +v++L++ N+ L++el++l++e+ klkse+ CCG008793.1 221 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVQNLSNDNSNLRNELQSLSEECNKLKSEN 283 89***********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 7.0E-22 | 1 | 60 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 3.5E-6 | 93 | 191 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.9E-19 | 215 | 281 | No hit | No description |
Pfam | PF00170 | 1.0E-20 | 221 | 283 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 3.3E-21 | 221 | 285 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.495 | 223 | 286 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.64E-12 | 224 | 281 | No hit | No description |
CDD | cd14702 | 2.01E-23 | 226 | 277 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 228 | 243 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MQAYYGAGAT PPPFFASTVA SPASHPYLWG SQHPLIPPYG TPVPYPALYP AGGVYAHPNM 60 APTPNSAQAN IEMEGKVPNG KGRASAKKAK GTSGGKAGES GKAASGSGND GASQSAESGS 120 DGSSDASEEN TNQQEYGASK KGSFNQMLAD ANAQSTSAGA NIQASVTGKP VVSMPATNLN 180 IGMDLWNASS AAGATKIRPN PSCATSGVVP AGMPEQWIQD ERELKRQKRK QSNRESARRS 240 RLRKQAECEE LQARVQNLSN DNSNLRNELQ SLSEECNKLK SENDSIKEEL TRLYGPEVVA 300 KLEQSNPASA PESHGDEGDS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 237 | 243 | RRSRLRK |
2 | 237 | 244 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF148192 | 0.0 | EF148192.1 Populus trichocarpa clone WS0128_J07 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011014392.1 | 0.0 | PREDICTED: G-box-binding factor 1-like isoform X1 | ||||
Refseq | XP_011014393.1 | 0.0 | PREDICTED: G-box-binding factor 1-like isoform X2 | ||||
Swissprot | P42774 | 1e-107 | GBF1_ARATH; G-box-binding factor 1 | ||||
TrEMBL | A0A3N7G124 | 0.0 | A0A3N7G124_POPTR; Uncharacterized protein | ||||
TrEMBL | A9PIG9 | 0.0 | A9PIG9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s12460.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5933 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.1 | 4e-92 | G-box binding factor 1 |