PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG006919.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB_related

Protein Properties

Length: 1086aa MW: 120508 Da PI: 9.6655

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG006919.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.5	2.6e-07	46	82	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W + E e++++a + G++ Wk++a+++ +R+ +++ CCG006919.1 46 QWKKAELERFYKAYRDNGTN-WKKVAAEVR-NRSVEMVE 82 6***************99.*****.*99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.1E-6	43	90	IPR009057	Homeodomain-like
Pfam	PF00249	7.7E-6	46	86	IPR001005	SANT/Myb domain
CDD	cd00167	7.17E-4	47	81	No hit	No description
SMART	SM01135	1.5E-58	619	720	IPR033471	DIRP domain
Pfam	PF06584	3.0E-33	619	719	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1086 aa Download sequence Send to blast
MAPARKKSVN KRFLNEVSPE KEVKSSGKSK QQANGKKKLS DKLGPQWKKA ELERFYKAYR 60 DNGTNWKKVA AEVRNRSVEM VEALYNMNRA YLSLPEGTAS VVGLIAMMID HYSVLEASDS 120 ERESNELPVV LRKPQKHKRP KVLLGASKED PQHSRMVGST DGCLSLLKRG CGRPLHAVGK 180 RTPRFPVSYL RKKDDGENYV SPKKKRRKLE INADDNDNEH AAVLALTEAL QRVDSPQMSQ 240 TPCGRTENMK SSPVQSWDRM SESSPANLCD ASINENWSES GIGRGGPDLA CVRDASSLAE 300 MEGIGTVEVH RKGKKFYGNK IRVEKIGNSQ SDDGGEACSG TEKEQKASTL KGKVEIEMSN 360 AKIDETFHRS QRKRSKKPFS DDEPADLMGL QTLALVSAME FESSSLLDDD RTTQTGDDKS 420 SIPESASTSH HRDKTKFSRQ KKKATSEVEG ATSGKSKLGR YPQSSAKSVS EANKRPQSIS 480 NDMLKRKREA LVAKVLDEEE NTSVVKGKHS AQISSPSKQL KSSKLPDGSF SGDQKTIAND 540 LATSTEQVPV ASQVILPTRK TSRRKMDLRR AMIPKVNVLK NQISKYSISL QDGATHLKDK 600 LSCILSSPMV RRWCTFEWFY SAVDYPWFAK REFVEYLNHV GLGHIPRLTR VEWGVIRSSL 660 GKPRRFSERF LQEEREKLQQ YRESVRKHYM ELRTGLREGL PTDLARPLSV GQRVIAIHPK 720 TRELHDGSVL TVDHDRCRVQ FDRAELGVEF VKDIDCMPSN PLDNMPEAPK RQKTSVLPKE 780 LPVNGKSNIG EFTAIEKLRN AESPMNALTK QAQVEANHAN LLAKATSTDI VNAQGACGQP 840 SRVSQIQLKE YDIRALSELN CVLDKKASSA LLNLRQLNTY PGNNVPAWLK PPANSCFSGM 900 LRPQSSCVSQ DSGSAVLEIV RGLRLKAHAM VDAAVQAISS MKEGEDAFSR IGEALDSMNR 960 SHLGSESRAQ MIRSQEEANT GLGLQNQLIP STPESQVNCN VSGPQSNDSE KIETAIPSEL 1020 ISSCVAALLM IQTCTERQYP PSDVAQIIDS AVTSLHPCCP QNLPIYREIQ MCMGRIKTQI 1080 LALIPT

Sequence ? help Back to Top

Protein Sequence Length: 1086 aa Download sequence Send to blast

MAPARKKSVN KRFLNEVSPE KEVKSSGKSK QQANGKKKLS DKLGPQWKKA ELERFYKAYR  60
DNGTNWKKVA AEVRNRSVEM VEALYNMNRA YLSLPEGTAS VVGLIAMMID HYSVLEASDS  120
ERESNELPVV LRKPQKHKRP KVLLGASKED PQHSRMVGST DGCLSLLKRG CGRPLHAVGK  180
RTPRFPVSYL RKKDDGENYV SPKKKRRKLE INADDNDNEH AAVLALTEAL QRVDSPQMSQ  240
TPCGRTENMK SSPVQSWDRM SESSPANLCD ASINENWSES GIGRGGPDLA CVRDASSLAE  300
MEGIGTVEVH RKGKKFYGNK IRVEKIGNSQ SDDGGEACSG TEKEQKASTL KGKVEIEMSN  360
AKIDETFHRS QRKRSKKPFS DDEPADLMGL QTLALVSAME FESSSLLDDD RTTQTGDDKS  420
SIPESASTSH HRDKTKFSRQ KKKATSEVEG ATSGKSKLGR YPQSSAKSVS EANKRPQSIS  480
NDMLKRKREA LVAKVLDEEE NTSVVKGKHS AQISSPSKQL KSSKLPDGSF SGDQKTIAND  540
LATSTEQVPV ASQVILPTRK TSRRKMDLRR AMIPKVNVLK NQISKYSISL QDGATHLKDK  600
LSCILSSPMV RRWCTFEWFY SAVDYPWFAK REFVEYLNHV GLGHIPRLTR VEWGVIRSSL  660
GKPRRFSERF LQEEREKLQQ YRESVRKHYM ELRTGLREGL PTDLARPLSV GQRVIAIHPK  720
TRELHDGSVL TVDHDRCRVQ FDRAELGVEF VKDIDCMPSN PLDNMPEAPK RQKTSVLPKE  780
LPVNGKSNIG EFTAIEKLRN AESPMNALTK QAQVEANHAN LLAKATSTDI VNAQGACGQP  840
SRVSQIQLKE YDIRALSELN CVLDKKASSA LLNLRQLNTY PGNNVPAWLK PPANSCFSGM  900
LRPQSSCVSQ DSGSAVLEIV RGLRLKAHAM VDAAVQAISS MKEGEDAFSR IGEALDSMNR  960
SHLGSESRAQ MIRSQEEANT GLGLQNQLIP STPESQVNCN VSGPQSNDSE KIETAIPSEL  1020
ISSCVAALLM IQTCTERQYP PSDVAQIIDS AVTSLHPCCP QNLPIYREIQ MCMGRIKTQI  1080
LALIPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	207	RKKDDGENYVSPKKKRRK
2	201	208	PKKKRRKL
3	202	206	KKKRR
4	202	207	KKKRRK
5	203	207	KKRRK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC184086	0.0	AC184086.2 Populus trichocarpa clone Pop1-58C2, complete sequence.
GenBank	AC214688	0.0	AC214688.1 Populus trichocarpa clone ACSB193-J04, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011036805.1	0.0	PREDICTED: protein ALWAYS EARLY 2-like isoform X2
TrEMBL	A0A2K2AAT8	0.0	A0A2K2AAT8_POPTR; Uncharacterized protein
STRING	cassava4.1_000578m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding