PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG006536.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 358aa MW: 39215.1 Da PI: 9.4375

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG006536.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.1	8.1e-54	26	153	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vls+ ++ CCG006536.1 26 LPPGFRFHPTDEELVVHYLKKKTTSAPLPV-AIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLSSgGT 122 79**************************.88***********988899************************************9777 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kk Lvfy g+ pkg kt+W+mheyrl CCG006536.1 123 QKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 153 88*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-65	21	187	IPR003441	NAC domain
PROSITE profile	PS51005	61.997	26	187	IPR003441	NAC domain
Pfam	PF02365	4.2E-28	27	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MERNDSSTGG AGGGDGGGRS SQQPNLPPGF RFHPTDEELV VHYLKKKTTS APLPVAIIAE 60 VDLYKFDPWE LPAKATFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVLSSG 120 GTQKVGVKKA LVFYGGKPPK GIKTNWIMHE YRLADNKVNN KPPGYDLGNK KNSLRLDDWV 180 LCRIYKKNNT QKPMDHDKDD SMDDVLGSTP PSISVGSHQN GTLHLAKGTN FGALLDNDQN 240 LFEGIISSSD GIRSSSSSLS HMASSVSKRD LLMLPPKRAL PSLYWTGEDI IGPSSSKRFQ 300 GGINGDEIVV RTDGNSSVAT LLGELPQTPQ LHQQTMLGSM ADGIFRPPYQ IPSMNWYS

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MERNDSSTGG AGGGDGGGRS SQQPNLPPGF RFHPTDEELV VHYLKKKTTS APLPVAIIAE  60
VDLYKFDPWE LPAKATFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVLSSG  120
GTQKVGVKKA LVFYGGKPPK GIKTNWIMHE YRLADNKVNN KPPGYDLGNK KNSLRLDDWV  180
LCRIYKKNNT QKPMDHDKDD SMDDVLGSTP PSISVGSHQN GTLHLAKGTN FGALLDNDQN  240
LFEGIISSSD GIRSSSSSLS HMASSVSKRD LLMLPPKRAL PSLYWTGEDI IGPSSSKRFQ  300
GGINGDEIVV RTDGNSSVAT LLGELPQTPQ LHQQTMLGSM ADGIFRPPYQ IPSMNWYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-73	20	189	9	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU823447	0.0	EU823447.1 Populus tremula isolate swl284-042 NAC domain protein gene, partial cds.
GenBank	EU823461	0.0	EU823461.1 Populus tremula isolate swl284-63E NAC domain protein gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011042501.1	0.0	PREDICTED: NAC domain-containing protein 18-like
Swissprot	Q9LD44	1e-120	NAC56_ARATH; NAC transcription factor 56
TrEMBL	B9N1L1	0.0	B9N1L1_POPTR; NAC family protein
STRING	POPTR_0001s41490.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1623	34	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-114	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]