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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG006044.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 360aa MW: 38340.5 Da PI: 6.508 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 116.8 | 2.7e-36 | 82 | 171 | 3 | 91 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 ++k+ ++++hTkv+gR+RRvR++a+caar+F+L++eLG+++d++ti WLl+ a+pai ++tgt++ +a ++ +++ + ++++ ++a CCG006044.1 82 AQKRNTKDRHTKVEGRGRRVRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIVAATGTGTVPAIAVsVNGTLKIPTESPATEAAD 171 689************************************************************777774432111111111111111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.7E-30 | 86 | 180 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.816 | 87 | 141 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0031347 | Biological Process | regulation of defense response |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MGSQNHHHTI EEIDQEHSIT VANVSNQPDR TTLQLKEETL TEPEGSRELE EHDNNVRRIN 60 NSSSNSCLVV HQVQRQQQVV MAQKRNTKDR HTKVEGRGRR VRMPATCAAR IFQLTRELGH 120 KSDGETIRWL LEHAEPAIVA ATGTGTVPAI AVSVNGTLKI PTESPATEAA DSDADGLVHK 180 KKRKRPCNSD FVDLTEAAHQ NSVSSGLAPI ASTSPQGLVP LWPMGTFVFP QGSSVGVGGS 240 NQAQFWAFPA TSTTPFFNMA ARPISSFVSA MQPGVQLAGN VSVDFGDAGG ELLGSGGSPP 300 NTIGSMSSSS SGSSAAAACG GGGGAQLLRD FSLEIYDKKE LQFFSHPVNH DHQQAPCSES |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00064 | PBM | Transfer from AT5G51910 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011041616.1 | 0.0 | PREDICTED: transcription factor TCP19-like | ||||
Swissprot | Q9LT89 | 5e-84 | TCP19_ARATH; Transcription factor TCP19 | ||||
TrEMBL | A0A3N7G1I0 | 0.0 | A0A3N7G1I0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s13660.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2118 | 30 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 3e-78 | TCP family protein |