 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
CCG004828.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 303aa MW: 33931.2 Da PI: 8.3831 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| CCG004828.1 | genome | LZU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61.1 | 1.8e-19 | 137 | 191 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k
CCG004828.1 137 RKKLRLSKDQAAILEESFKEHNTLNPKQKMGLAKQLGLRPRQVEVWFQNRRARTK 191
788899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 129.8 | 1.1e-41 | 137 | 226 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rlsk+q+++LEesF+e+++L+p++K+ la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
CCG004828.1 137 RKKLRLSKDQAAILEESFKEHNTLNPKQKMGLAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 226
69*************************************************************************************9.55 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009641 | Biological Process | shade avoidance |
| GO:0009734 | Biological Process | auxin-activated signaling pathway |
| GO:0009826 | Biological Process | unidimensional cell growth |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MMAGKEDLGL SLSLSVPQNQ HSLQLNLMPS LVPSTASSSI SGFHPQKSPW NVTFPSSDPN 60
SNSYRAETRS LLRGIDVNRL PSTADCEEEA GVSSPNSTIS SISGKRSERE GINGDEHEME 120
RDSSRGISDE EDGETSRKKL RLSKDQAAIL EESFKEHNTL NPKQKMGLAK QLGLRPRQVE 180
VWFQNRRART KLKQTEVDCE FLKRCCENLT EENRRLQKEV QELRALKLSP QFYMQMTPPT 240
TLTMCPSCER VAAPPTASYT VDARSHPHVI GPTRHRPILM NPWAPDAPVT RGPTPFDAIR 300
PRS
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 135 | 141 | SRKKLRL |
| 2 | 185 | 193 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}. |
