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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG003449.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 252aa MW: 29432.7 Da PI: 6.8835 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 133.9 | 1.1e-41 | 7 | 129 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 pGfrFhPt+eel+++yL+k v g+++ ++i +diy++ePwdLp k +e+ewyf ++r++ r++r+t++gyWkatg+d+++ + ++ CCG003449.1 7 PGFRFHPTEEELLDFYLTKTVLGQDTA--DIIGFLDIYNHEPWDLPGLSKIGEREWYFLVHRESVL---GRPRRTTEKGYWKATGSDRPIRCLmdPKR 99 9***********************943..68***************8778899********99976...59*******************98766788 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 l g +kt+vfy+grap+g+ktdWvm+eyrl CCG003449.1 100 LLGHRKTMVFYRGRAPRGSKTDWVMNEYRL 129 8***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 49.538 | 5 | 147 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.24E-48 | 5 | 147 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-23 | 7 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MEFDELPGFR FHPTEEELLD FYLTKTVLGQ DTADIIGFLD IYNHEPWDLP GLSKIGEREW 60 YFLVHRESVL GRPRRTTEKG YWKATGSDRP IRCLMDPKRL LGHRKTMVFY RGRAPRGSKT 120 DWVMNEYRLP SNCYLSKEMV LCKVYRKATS LKVLEQRAAI EEMVRAPNVT SLSPPMQDNF 180 SFYDHQKSFN KFLFEQNNVV HKVEGVAVIE DEDSKIGYPS QIMGVGPIKE HYSELLSPKL 240 ALDWTIDSFW PN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-35 | 2 | 147 | 12 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011022209.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like | ||||
Swissprot | Q10S65 | 3e-72 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A2K2AER3 | 1e-179 | A0A2K2AER3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s10610.1 | 1e-178 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6214 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 5e-82 | NAC domain containing protein 36 |
Publications ? help Back to Top | |||
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