PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG003400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 303aa MW: 34125.7 Da PI: 7.6477 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.1 | 5.9e-52 | 11 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhP+deelv++yL +k+++ +l + evd++k+ePwd+p++++ + kewyf+s+rd+kyatg r+nrat+sgyWkatgkd++vl+ kg+ CCG003400.1 11 LPPGFRFHPKDEELVCDYLMNKASQYCDSL--LMIEVDLNKCEPWDIPEAARVGGKEWYFYSQRDRKYATGLRTNRATASGYWKATGKDRHVLR-KGT 105 79********************99988666..6899************8888999**************************************9.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg++ktLvfy+grapkg++tdWvmhe+rle CCG003400.1 106 LVGMRKTLVFYQGRAPKGKRTDWVMHEFRLE 136 ****************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.93E-59 | 2 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.408 | 11 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.0E-27 | 12 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 303 aa Download sequence Send to blast |
MSNISFVEAK LPPGFRFHPK DEELVCDYLM NKASQYCDSL LMIEVDLNKC EPWDIPEAAR 60 VGGKEWYFYS QRDRKYATGL RTNRATASGY WKATGKDRHV LRKGTLVGMR KTLVFYQGRA 120 PKGKRTDWVM HEFRLEGPLG PPKISSDKED WVLCRVFCKS NREVVAKPSM GSCNDDTGSS 180 SLPALLDSYI TYEQTQPNFD EHEQVPCFSI FSQNQTSQNL LAPYTTQMEI PNAPAKCTSP 240 FGKVPMDITA PSFSCDTKVL KAVLNNLTKM ESYGNLKGSP SLGEGSSESY ISEVGMSSLW 300 NYY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-51 | 6 | 161 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-51 | 6 | 161 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-51 | 6 | 161 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-51 | 6 | 161 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-51 | 6 | 161 | 12 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-51 | 6 | 161 | 12 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011022123.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 1e-121 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A2K2AED0 | 0.0 | A0A2K2AED0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s10100.1 | 1e-177 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10010 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G56010.2 | 1e-116 | NAC domain containing protein 1 |