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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG002241.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 239aa MW: 26436.7 Da PI: 8.0657 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.9 | 3.8e-16 | 109 | 158 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g ++AeIrd + ng +r++lg+f+t e Aa a+++a+++l g CCG002241.1 109 YRGVRNRP-WGTYAAEIRDSTRNG--ARVWLGTFDTGEAAALAYDQAALSLQG 158 9****777.**********44465..***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.286 | 108 | 166 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-32 | 108 | 172 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-20 | 108 | 168 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-29 | 108 | 167 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-11 | 109 | 158 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-9 | 109 | 120 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.67E-17 | 109 | 167 | No hit | No description |
PRINTS | PR00367 | 3.0E-9 | 132 | 148 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MDHSFFNNPN QEFSTSPPFG LLDPSWDKLP FNLHDFSPFN SDDSEGNQET LPSDVPLTEA 60 KASTHSIASD VPPNIAKNDL PQLSSSKEIR EQEATPKAKK NIPTRKKTYR GVRNRPWGTY 120 AAEIRDSTRN GARVWLGTFD TGEAAALAYD QAALSLQGSK AVLNFPIEQV RKSLEELKCG 180 FTDWCSPAEA LKKTHSKRKP MSGKRKGKGL ATKEVLVLED LGADYLETLL SSCERGIPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-25 | 107 | 168 | 4 | 65 | ATERF1 |
3gcc_A | 1e-25 | 107 | 168 | 4 | 65 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028796.1 | 1e-178 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 2e-50 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A2K2BD47 | 1e-154 | A0A2K2BD47_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s04010.1 | 1e-162 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17133 | 3 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 3e-41 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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