 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
CCG001200.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
NF-YC |
| Protein Properties |
Length: 216aa MW: 24613 Da PI: 4.4663 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| CCG001200.1 | genome | LZU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 123.5 | 8.2e-39 | 47 | 150 | 2 | 101 |
NF-YC 2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95
l +fw++q i ++t k n+ lPlarik+++k+d dvkmisae+P+l+skacelfileltlr+wl++ ++krrtl+ +di+ ++ + d+ +fl +
CCG001200.1 47 LDQFWNQQlleIYSTTASKsNNMLPLARIKRVMKSDGDVKMISAETPILFSKACELFILELTLRAWLQTTSCKRRTLQCCDISRVIRQEDMLNFLNRV 144
789*****876445555555999*************************************************************************** PP
NF-YC 96 vprdel 101
vp d++
CCG001200.1 145 VPCDHK 150
*99865 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 216 aa
Download sequence Send
to blast |
MDLNQSIELD PASEDPSPQE VENALPMNSS MLPCHQTTKE LQHKQNLDQF WNQQLLEIYS 60
TTASKSNNML PLARIKRVMK SDGDVKMISA ETPILFSKAC ELFILELTLR AWLQTTSCKR 120
RTLQCCDISR VIRQEDMLNF LNRVVPCDHK KEDEVTKCTE EMESLPDMQM PAFPFPDLNG 180
EVMMDENNHE DPQELMIKPP MPSSDFSSGS ASKSAN
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC209042 | 2e-89 | AC209042.1 Populus trichocarpa clone POP052-O09, complete sequence. |
