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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG000591.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 425aa MW: 47428.6 Da PI: 5.1452 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.8 | 4.5e-32 | 54 | 193 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWk 84 lp+G++F+P+d+e++++ L+k +g+ ++ e+i++v+ i++++P++Lp vk++ + +fF+k+ k+y+tg+rk+r+++ + +W+ CCG000591.1 54 LPRGVKFDPSDQEIIWHLLAKAGNGEIkphpfIK--EFIPTVEnddgICYTHPKNLP-GVKQDGSISHFFHKAIKAYNTGTRKRRKIQaddfgDVRWH 148 799************8777766555546654422..33444422345**********.677777888******************86555665889** PP NAM 85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +tg++k+v+ +g ++g+kk++v+y + k+ekt+Wvmh+y+l CCG000591.1 149 KTGRTKPVIL-DGIQKGCKKIMVLYtsTVGGGKAEKTNWVMHQYHL 193 **********.99************5434566778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.32E-38 | 39 | 212 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.867 | 54 | 212 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-14 | 55 | 193 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
PWLVDGNRFA TKIKSASSAS NHEIVAWKSD PCKTCPNCHH VIDNSDVVQE WPGLPRGVKF 60 DPSDQEIIWH LLAKAGNGEI KPHPFIKEFI PTVENDDGIC YTHPKNLPGV KQDGSISHFF 120 HKAIKAYNTG TRKRRKIQAD DFGDVRWHKT GRTKPVILDG IQKGCKKIMV LYTSTVGGGK 180 AEKTNWVMHQ YHLGTGEDER DGEYVVSKVF YQQQAANKGE KTEEDLSEIA NAVFAKVDPV 240 TPKSVTPDPP RAERRCQDFD LGKESTNVCT EPYAEHPGVE NLEEANLRHE SPCYNHQPGM 300 ENHVDQMVSD NDNCAEEGTK WWDSESQNLL DSQQLVEGLS LCDEFLQSQS PSRGGHGTGA 360 SGKSGLSDYA RLGSEHLKKD LEECQNLELD PANIELDTPP EFRLSQLEFG SQDSFMAWGE 420 GRVAD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011021659.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like | ||||
Swissprot | Q6NQK2 | 1e-177 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | B9HIY7 | 0.0 | B9HIY7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s11550.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5662 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-178 | NAC family protein |