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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG000436.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 241aa MW: 27634.2 Da PI: 6.0915 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.2 | 6.9e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gkl+e++s CCG000436.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNSGKLFEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 90.5 | 3e-30 | 82 | 173 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++e+++++ +qe+ +Lk +++ Lqr+qR++lGedL++L eL qLe+qL++slk+iR++K +++l++++elq+ke+ l e+n+aL++klee CCG000436.1 82 QSEKETQNKYQEYLQLKTRVDVLQRSQRNVLGEDLGNLGTMELDQLEDQLDSSLKQIRNRKAQFILDELSELQRKEELLLETNNALKRKLEE 173 68999************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.165 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.39E-44 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 3.01E-33 | 2 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.8E-24 | 84 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.682 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN SGKLFEFCSS 60 SNMAATIEKY QRFSYGALEG GQSEKETQNK YQEYLQLKTR VDVLQRSQRN VLGEDLGNLG 120 TMELDQLEDQ LDSSLKQIRN RKAQFILDEL SELQRKEELL LETNNALKRK LEETTAAIRL 180 SWKVGEQHVP YSFQPVQPYD SVEPLQYNST FQFGYNPAET DQGTVTSSTQ NVNGFIPGWM 240 L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 3e-25 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 3e-25 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 3e-25 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 3e-25 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00030 | SELEX | Transfer from AT2G03710 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU121637 | 0.0 | EU121637.2 Populus deltoides clone F049-A07 MADS-box protein (MADS1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011018962.1 | 1e-178 | PREDICTED: MADS-box protein CMB1-like | ||||
Swissprot | Q8LLR2 | 1e-109 | MADS2_VITVI; Agamous-like MADS-box protein MADS2 | ||||
TrEMBL | A0A2K1ZEQ1 | 1e-167 | A0A2K1ZEQ1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s09790.1 | 1e-119 | (Populus trichocarpa) | ||||
STRING | XP_010257958.1 | 1e-118 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF229 | 32 | 178 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.2 | 4e-86 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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