PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

CA11g10410

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 252aa MW: 28536.9 Da PI: 6.9627

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA11g10410	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.4e-05	86	105	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ CA11g10410 86 FSCPLCFKTFNRYNNMQMHM 105 89*****************9 PP
2	zf-C2H2	15.1	6.5e-05	170	192	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ CA11g10410 170 FMCRKCGKAFAVRGDWRTHEKNC 192 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.65E-5	81	108	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.9E-5	86	105	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.61	86	108	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.66	86	113	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	88	108	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.18E-7	152	190	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.3E-6	166	190	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	49	170	190	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.808	170	190	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009860	Biological Process	pollen tube growth
GO:0010500	Biological Process	transmitting tissue development
GO:1990058	Biological Process	fruit replum development
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
ENKEESFISN FGDEDQDDES VSVALQLGLP NPSPQDVISS ISNTNKEQEE LTVANIGYSS 60 TTSSTLHKGQ YWIPTPAQIL IGPTQFSCPL CFKTFNRYNN MQMHMWGHGS QYRKGPESLR 120 GTQPTAMLRL PCFCCAPGCR NNIDHPRAKP LKDFRTLQTH YKRKHGIKPF MCRKCGKAFA 180 VRGDWRTHEK NCGKLWYCTC GSDFKHKRSL KDHIKAFGNG HEAYGIDCLE EEDEPASEIE 240 QDHDHDHDPS N*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	0.0	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016548865.1	0.0	PREDICTED: zinc finger protein WIP2
Swissprot	Q9SVY1	1e-129	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A1U8EZP8	0.0	A0A1U8EZP8_CAPAN; zinc finger protein WIP2
STRING	XP_009780788.1	1e-167	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA462	24	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-131	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]