PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g17790
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 313aa    MW: 36588.1 Da    PI: 4.4528
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g17790genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.31.8e-102152901491
                 T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
          B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                 + l++p + +++++++   +  ++++d+ gr++e +++ +k+ g+++l++GW + +k n ++e+D ++ ++++  +++ 
  CA08g17790 215 SSLYVPVDLVRDCKLE--LPSSMIIRDSAGREFETECKTDKQ-GKTWLRGGWDRLCKWNLVEENDKCIWEFVRGkHNKV 290
                 46999********888..5557999************54444.5689***********************987634443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.659149IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-7451IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-10553IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-14202293IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.75E-14202293IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0024209297IPR003340B3 DNA binding domain
PfamPF023626.4E-9215290IPR003340B3 DNA binding domain
PROSITE profilePS508638.374217301IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGVTKTGRDF YFEYKWEKFI EDNSLELGDF LVFDFDGNRT FYTKLLGKNG CEKKEAGGLK  60
LTVEEEEEIN EHHNSVEPKG KNLASDNSSS SSDDDDSVED YVVDEKEKED EEYEEEEEEE  120
EKEEEETEEA ARSKRKRMVE EEHDDDEEEE TEAENEEENQ RVDTFEKKVS RSKAGCKRVA  180
TRKVRDLHDH FDDDIFKSGW AAQPKNPYFV AKIRSSLYVP VDLVRDCKLE LPSSMIIRDS  240
AGREFETECK TDKQGKTWLR GGWDRLCKWN LVEENDKCIW EFVRGKHNKV LYIQVQVLRE  300
GSSCHPDKKN KK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016539656.10.0PREDICTED: B3 domain-containing protein At4g34400-like
TrEMBLA0A2G2Y3T10.0A0A2G2Y3T1_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000276737e-96(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-07B3 family protein