PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g05810
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 347aa    MW: 41091.4 Da    PI: 9.4769
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g05810genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.44e-163751997
                -HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3 19 pkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                p  f  ++ +gk   +k ++l+d+ g  W++++   k +++++++ GW +Fvk+n+Lk gDf++F +dg++ f  ++k++
  CA07g05810  3 PPGFR-DYkNGK--LPKRVSLRDRLGHIWSMRV--AKIGREIYFQYGWPKFVKDNKLKHGDFLIFDYDGNKIF--NIKIL 75
                55553.552333..7889***************..**********************************9999..66655 PP
2B337.34.9e-122473331098
                 HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
          B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                 + ++++l++p + +++++++   + t++++d+ gr++e ++  +k  gr++l +GW++F++ n ++ +D  v +++++ s+  l+v +f 
  CA07g05810 247 SKRRNQLYVPMDVVRDYKHE--FPSTMSIRDSAGREFETRVVKWKD-GRIWLVGGWRSFCRWNLVQKNDKWVCEFVREkSSLYLKVNIFH 333
                 567899***********865..7889***************77776.5899******************999999988788888888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086315.227178IPR003340B3 DNA binding domain
SMARTSM010190.0052178IPR003340B3 DNA binding domain
PfamPF023626.4E-14274IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-18279IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-17279IPR015300DNA-binding pseudobarrel domain
CDDcd100173.49E-12268No hitNo description
Gene3DG3DSA:2.40.330.104.9E-17234334IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-17234333IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.673238335IPR003340B3 DNA binding domain
CDDcd100176.09E-10239332No hitNo description
SMARTSM010190.0014241335IPR003340B3 DNA binding domain
PfamPF023628.9E-11247333IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
KIPPGFRDYK NGKLPKRVSL RDRLGHIWSM RVAKIGREIY FQYGWPKFVK DNKLKHGDFL  60
IFDYDGNKIF NIKILGSNGY EKKEDGCLKL GVLEESEEMN IEHQKCVEPK GKNWARYSNS  120
SSYSNRSDKD SLKDGDKEYD QTKKMRCSKW KDVQEEEVYE EEDEFEEEEE EDKEETKKVT  180
HSKRKHEEEV NERSGTFNNK ESRLKASWKR STDHKVNDLH DTFGANVFKS GCAIQPKNPY  240
FVAKVQSKRR NQLYVPMDVV RDYKHEFPST MSIRDSAGRE FETRVVKWKD GRIWLVGGWR  300
SFCRWNLVQK NDKWVCEFVR EKSSLYLKVN IFHEEASAHP NKKIKK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016578838.11e-125PREDICTED: B3 domain-containing protein At3g18960-like, partial
TrEMBLA0A2G2Z1I90.0A0A2G2Z1I9_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000276731e-104(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.14e-16B3 family protein