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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g24800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | AP2 | ||||||||
Protein Properties | Length: 642aa MW: 71469.9 Da PI: 7.1281 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.2 | 7.5e-12 | 315 | 371 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +++Aa+a++ a++k++g CA02g24800 315 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEDKAARAYDLAALKYWG 371 78*******************87776664446655.77***99*************98 PP | |||||||
2 | AP2 | 41.1 | 4.6e-13 | 416 | 466 | 3 | 55 |
AP2 3 ykGV.rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV +++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g CA02g24800 416 YRGVtSRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 466 9****99**********988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.7E-9 | 315 | 371 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.84E-18 | 315 | 379 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-14 | 315 | 381 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-21 | 316 | 385 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.8E-12 | 316 | 380 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.148 | 316 | 379 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 317 | 328 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-16 | 414 | 476 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.28E-23 | 414 | 476 | No hit | No description |
SMART | SM00380 | 4.6E-31 | 415 | 480 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-18 | 415 | 474 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.098 | 415 | 474 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-7 | 416 | 466 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 456 | 476 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 642 aa Download sequence Send to blast |
MKSLSNDDSS NNNNHWLGFS LSPHINSLEG PLADQHHNTQ PGSSDVQSSV PIRFSPTHLN 60 YPGMFFESDN AGLYSSLSAM PLKSDGSLCI MKGFNRSQQP QGMVSSTPKL EDFFGDAAMG 120 SHHYEGCNRG GMAHSLHNIY YNQHQENETT NSQDFLNHIQ ENTRQQQQQQ QHYPDFSAFR 180 GHELYQSTEQ GKAECSNLQV PTMTNEEMSG MNNWVSRNYQ NPTGHALEQN MIGCMADNGA 240 ETASVGAMTY GDFKSLSLSM SPGSQSSCIT GTQQISPAVT ECIAMETKKR GPEKVNHQKQ 300 IVHRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQSRKGRQG GYDMEDKAAR 360 AYDLAALKYW GPSTHINFPL ENYQQELEEM KNMTRQEYVA HLRRKSSGFS RGASMYRGVT 420 SRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGVNAV TNFDISRYDV 480 ERIMASNTLL AGELARRNKD TETSKEICNQ NLIANASHHG EVNIQNKEEN GNAVDWTMTL 540 YQSSSAGVDT NTMNSTPLQG QMDESARMNT HLSNASSLVT SLGSSREVSP TKNNGHSMHN 600 FAMMPQSAPK LIPTPATNIT SWISSAQLRP NVPVFAAWTD A* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016560917.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X1 | ||||
Swissprot | Q38914 | 1e-143 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A2G3D8I7 | 0.0 | A0A2G3D8I7_CAPCH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
STRING | Solyc02g092050.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2074 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-142 | AP2 family protein |