PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g13320
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HSF
Protein Properties Length: 329aa    MW: 37046.6 Da    PI: 7.0258
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g13320genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind87.51.7e-27371272101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+ye+++++e++ l++w++++++f+++d+++f  +vLpkyFkhsn++SF+ QLn Y Fkkv + +          e+++++F++gkk+ l++ik
    CA02g13320  37 FLVKTYEMVDNPETDPLVHWTSSKTTFLITDPNKFCIEVLPKYFKHSNLSSFIYQLNNYRFKKVCSYK---------CEYANPWFRAGKKHWLKNIK 124
                   9****************************************************************999.........67****************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                    + 
    CA02g13320 125 SRI 127
                   986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-2931121IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.98E-2932125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-3633126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-143760IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-2437125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-147587IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-1488100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEMINQENGG KRGGRRGGGG VGRPRINGLR GNSPPPFLVK TYEMVDNPET DPLVHWTSSK  60
TTFLITDPNK FCIEVLPKYF KHSNLSSFIY QLNNYRFKKV CSYKCEYANP WFRAGKKHWL  120
KNIKSRIQLS KENKPQQGLH SPRVDPVTDN LEEELEKLRS EHINLKVELQ NLKDGQENMR  180
AFFPTLQGCR KETDIRNILK LLLEKSEVRG DSSSNDTRKG PDCVAGSVQD GIGQTSNSAG  240
GSVSSNDKQK EAATAQNAKN REFWVKLFED DSESKNEGAE SEQELNRRAM IEIEEMVESK  300
IAMEGEALIA KAAASLDDEA EAYLQLWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-201912710130Heat shock factor protein 1
5d5v_B2e-201912710130Heat shock factor protein 1
5d5v_D2e-201912710130Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11219GGRRGGGG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-121HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016558298.10.0PREDICTED: heat stress transcription factor A-6a-like
TrEMBLA0A1U8FPK10.0A0A1U8FPK1_CAPAN; Uncharacterized protein
TrEMBLA0A2G3A7Q00.0A0A2G3A7Q0_CAPAN; heat stress transcription factor A-6a-like
STRINGPGSC0003DMT4000730650.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129701518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.14e-38heat shock transcription factor A2