 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
CA01g19870 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
| Family |
C2H2 |
| Protein Properties |
Length: 307aa MW: 34714.1 Da PI: 8.1775 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| CA01g19870 | genome | PEP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 16.8 | 1.9e-05 | 146 | 165 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++C+ C k+F+r nL+ H+
CA01g19870 146 FSCHLCYKTFNRYNNLQMHM 165
89*****************9 PP
|
| 2 | zf-C2H2 | 15.9 | 3.8e-05 | 230 | 252 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C +Cgk+F k + ++H +++
CA01g19870 230 FMCRKCGKPFAVKGDWRTHEKNC 252
89*****************9987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 307 aa
Download sequence Send
to blast |
MTEPYYNFFT GGWFNFLPLH QQYISSSNFC YNKEIAPPPP PPPSPPLREA LPLLNSNNYY 60
SCESSTTTFS HEENNNNNSN CNINENVSVS LHIGLPSSCE GVVDSGGGNK EDQFDVVMSN 120
NTTSSLIKGQ YWIPTPSQIL IGPTQFSCHL CYKTFNRYNN LQMHMWGHGS QYRKGPESLR 180
GTQPSAMLRL PCYCCAHGCK HNIDHPRARP LKDFRTLQTH YKRKHGAKPF MCRKCGKPFA 240
VKGDWRTHEK NCGKIWYCIC GSDFKHKRSL KDHIKSFGRG HGAVGVPNLE DLEEDSTSEI 300
EQDLIL*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975513 | 1e-165 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
