PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g45390

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HSF

Protein Properties

Length: 259aa MW: 30088.3 Da PI: 9.6721

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g45390	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	106.6	1.9e-33	33	124	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F++k+y+i+ed++++++i w+ g+sfv++d+++f+ ++LpkyF+h+n++SFv QLn YgFkk+ ++ we+ h +F++gkk+ll +ik CA00g45390 33 FITKTYDIVEDPNTNSIICWNPCGTSFVIWDHNRFSFEILPKYFRHTNMSSFVYQLNNYGFKKIGLQK---------WEYGHYWFQAGKKHLLANIK 120 9*************************************************************9998.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+ + CA00g45390 121 RRGK 124 *965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	7.3E-34	29	122	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	3.4E-31	29	122	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.9E-45	29	122	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.1E-29	33	122	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.3E-17	33	56	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.3E-17	71	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.3E-17	84	96	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MAMNNMVQFS TGQHEHGGGD GARMLREPGI PPFITKTYDI VEDPNTNSII CWNPCGTSFV 60 IWDHNRFSFE ILPKYFRHTN MSSFVYQLNN YGFKKIGLQK WEYGHYWFQA GKKHLLANIK 120 RRGKNVNDQK DFHQEMYYHG VEEELRNQRD INDTLVSELE KLKQRQEDMV NGIASLKEYL 180 EKSEAESRKI ICFLAKAVKQ VAMKRGMKRT DVEVRDVTMS KRRVEDATES SKKNMIDFSA 240 IKRAHDIAQK PKIEKGSV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	2e-27	30	127	17	125	Heat shock factor protein 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016549521.1	0.0	PREDICTED: heat stress transcription factor A-6b-like
TrEMBL	A0A1U8ET15	0.0	A0A1U8ET15_CAPAN; Uncharacterized protein
TrEMBL	A0A2G2XZD0	0.0	A0A2G2XZD0_CAPAN; heat stress transcription factor A-6b-like
STRING	PGSC0003DMT400093663	1e-136	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13740	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	2e-46	heat shock transcription factor A2