PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_28518
Common NameKK1_028895
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HD-ZIP
Protein Properties Length: 818aa    MW: 89565.5 Da    PI: 6.6594
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_28518genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181876357
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  C.cajan_28518 18 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                   6789*****************************************************97 PP
2START170.41.2e-531673742204
                    HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 
                    +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++ +++l  + +g  g+++lm+
  C.cajan_28518 167 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCKGVAARACGLVSLEPT-KVAEILKDRQSWYRDCRCVDVLSIVPTGngGTIELMY 261
                    68999*****************************************************.8888888888*************************** PP

                    EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
          START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                    ++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p+   s  ++Rae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s
  C.cajan_28518 262 MQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPTgppSTTFIRAEVLPSGFLIRPCEGGGSIIHIVDHIDLDVWSVPEVLRPLYES 357
                    ***************************************999999999************************************************ PP

                    HHHHHHHHHHHHTXXXX CS
          START 188 glaegaktwvatlqrqc 204
                    + + ++k + a+lq+ +
  C.cajan_28518 358 SKILAQKLTIAALQHIR 374
                    **************866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.711377IPR001356Homeobox domain
SMARTSM003898.6E-161581IPR001356Homeobox domain
SuperFamilySSF466891.07E-161880IPR009057Homeodomain-like
PfamPF000463.0E-161876IPR001356Homeobox domain
CDDcd000861.08E-161878No hitNo description
Gene3DG3DSA:1.10.10.601.4E-182076IPR009057Homeodomain-like
CDDcd146861.71E-670109No hitNo description
PROSITE profilePS5084825.559157358IPR002913START domain
CDDcd088752.21E-69161377No hitNo description
Gene3DG3DSA:3.30.530.209.2E-22165349IPR023393START-like domain
SMARTSM002341.4E-49166376IPR002913START domain
PfamPF018525.8E-51167374IPR002913START domain
SuperFamilySSF559611.29E-35167378No hitNo description
PfamPF086707.4E-27701798IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MALSMHKDSG NNQMDSSKYV RYTPEQVEAL ERVYAECPKP SSLRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQTVNRKL TAMNKLLMEE NDRLQKQVSH LVYENGYMKQ  120
QIQTASAGTT TDNSCESVVM SGQNQQQNPT PQHPHRDANN PAGLLAIAEE TLAEFLSKAT  180
GTAVDWVQMI GMKPGPDSIG IVAVSRNCKG VAARACGLVS LEPTKVAEIL KDRQSWYRDC  240
RCVDVLSIVP TGNGGTIELM YMQTYAPTTL AAARDFWTLR YTTSLEDGSL VICERSLTSS  300
TGGPTGPPST TFIRAEVLPS GFLIRPCEGG GSIIHIVDHI DLDVWSVPEV LRPLYESSKI  360
LAQKLTIAAL QHIRQIAQES SGEIQYGGGR QPAVLRTFSQ RLCRGFNDAV NGFVDDGWSL  420
MGTDGVEDVT IAINSSPNKF LGSNYNASMF PAFGGGVLCA KASMLLQNVP PPLLVRFLRE  480
HRSEWADYGV DAYSAACLKA SPYAVPCARP GGFPSSQVIL PLAHTIEHEE FLEVVRIEGH  540
AFSPEDVALA RDMYLLQLCS GVDENAIGAC AQLVFAPIDE SFADDALLLP SGFRVIPLDP  600
KSDGPAATRT LDLASTMEVG SGNARPAGEA DLNGYNLRSV LTIAFQFTFE NHTRDNVAAM  660
ARQYVRSVVG SVQRVAMAIA PSRLCSQLGP KSLPGSPEAL TLARWICRSY RIHTGTEIFR  720
AESTAGDAIL KQLWHHSDAI MCCSVKTNAS PVFTFANQAG LDMLETTLVA LQDIMLDKVL  780
DESGRKILCS EFSKIMQQCP MSRPLLGKSS MMMILITA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_28518
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020233213.10.0homeobox-leucine zipper protein ATHB-14
SwissprotO042910.0ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14
TrEMBLA0A151S3H20.0A0A151S3H2_CAJCA; Homeobox-leucine zipper protein ATHB-14
STRINGGLYMA09G02750.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  3. Müller CJ, et al.
    PHABULOSA Mediates an Auxin Signaling Loop to Regulate Vascular Patterning in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 956-70
    [PMID:26637548]
  4. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  5. Kim ES, et al.
    HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots.
    Physiol Plant, 2016. 157(2): p. 221-33
    [PMID:26968317]
  6. Husbands AY,Aggarwal V,Ha T,Timmermans MC
    In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes.
    Plant Cell, 2016. 28(8): p. 1783-94
    [PMID:27385814]
  7. Di Ruocco G, et al.
    Differential spatial distribution of miR165/6 determines variability in plant root anatomy.
    Development, 2018.
    [PMID:29158439]
  8. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  9. Hashimoto K,Miyashima S,Sato-Nara K,Yamada T,Nakajima K
    Functionally Diversified Members of the MIR165/6 Gene Family Regulate Ovule Morphogenesis in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(5): p. 1017-1026
    [PMID:29462472]