PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_21708 | ||||||||
Common Name | KK1_022351 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NAC | ||||||||
Protein Properties | Length: 244aa MW: 27829.2 Da PI: 7.9537 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 141.7 | 4.3e-44 | 5 | 139 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 ppGfrF Pt+eelv +yL+kk++g++ +++vi+ +di+ vePw+Lp+ ++++++++w+fF++ ++++a+g r++r+t+ gyWkatg+ C.cajan_21708 5 PPGFRFFPTEEELVGFYLQKKLQGQRnslaSAIDSVIPVIDINGVEPWNLPThageRCRGDTEQWFFFCPGQEREARGGRPSRTTACGYWKATGSP 100 8*************************66654445589999**********9535665566788********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s++++++g+kk++vfykg+ap g+kt+W m+eyr+ C.cajan_21708 101 GYVYSSHNRVIGMKKSMVFYKGKAPLGTKTEWKMNEYRA 139 *************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.89E-48 | 3 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.783 | 4 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-24 | 5 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MVDHPPGFRF FPTEEELVGF YLQKKLQGQR NSLASAIDSV IPVIDINGVE PWNLPTHAGE 60 RCRGDTEQWF FFCPGQEREA RGGRPSRTTA CGYWKATGSP GYVYSSHNRV IGMKKSMVFY 120 KGKAPLGTKT EWKMNEYRAI EFSNQSTPRL RREFSLCRVY VISGSFRAFD RRPLEREGAE 180 SQRIVAQQTA REDGSSSSQN SHLGGVYSLQ VAEGGDLVWN LNVNTEVQLQ QPLWEFEWEQ 240 FNSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 5e-35 | 5 | 160 | 21 | 166 | NAC domain-containing protein 19 |
3swm_B | 5e-35 | 5 | 160 | 21 | 166 | NAC domain-containing protein 19 |
3swm_C | 5e-35 | 5 | 160 | 21 | 166 | NAC domain-containing protein 19 |
3swm_D | 5e-35 | 5 | 160 | 21 | 166 | NAC domain-containing protein 19 |
3swp_A | 5e-35 | 5 | 160 | 21 | 166 | NAC domain-containing protein 19 |
3swp_B | 5e-35 | 5 | 160 | 21 | 166 | NAC domain-containing protein 19 |
3swp_C | 5e-35 | 5 | 160 | 21 | 166 | NAC domain-containing protein 19 |
3swp_D | 5e-35 | 5 | 160 | 21 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_21708 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020215143.1 | 0.0 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 8e-80 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A151TNW4 | 0.0 | A0A151TNW4_CAJCA; NAC domain-containing protein 90 | ||||
STRING | GLYMA11G18770.1 | 1e-122 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 1e-82 | NAC domain containing protein 61 |
Publications ? help Back to Top | |||
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