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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_13317 | ||||||||
Common Name | KK1_013725 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 223aa MW: 25132.9 Da PI: 9.6572 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.3 | 3.1e-21 | 17 | 64 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i ks qvtfskRr g++KKA+EL++LC++e+a+i+fs+ +k + + C.cajan_13317 17 KIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPADKAFSF 64 57789999*********************************9987655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.932 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.2E-29 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-25 | 9 | 80 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.93E-33 | 9 | 85 | No hit | No description |
PRINTS | PR00404 | 5.1E-17 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-23 | 17 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-17 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-17 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MIKRKCSSGR QKIPIEKIPK KSHLQVTFSK RRSGLFKKAS ELCTLCGVEI AIIVFSPADK 60 AFSFGHPEVE SIIDSYLTPN SSLESSSGHQ LVEVHRNANI GNLNMQLTQI LNQLEIEKKQ 120 GEELDRVWKT RQSKFWWEIP VPQLGLHELQ HLMFSMEELK KNVAKYATQM LMDQNNVPAP 180 VNGPGPAPNG FGPFDAFGHK PPQIYANVNS STLINPSAFN FRY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 7e-16 | 9 | 93 | 1 | 85 | Myocyte-specific enhancer factor 2A |
3kov_B | 7e-16 | 9 | 93 | 1 | 85 | Myocyte-specific enhancer factor 2A |
3kov_I | 7e-16 | 9 | 93 | 1 | 85 | Myocyte-specific enhancer factor 2A |
3kov_J | 7e-16 | 9 | 93 | 1 | 85 | Myocyte-specific enhancer factor 2A |
3p57_A | 7e-16 | 9 | 93 | 1 | 85 | Myocyte-specific enhancer factor 2A |
3p57_B | 7e-16 | 9 | 93 | 1 | 85 | Myocyte-specific enhancer factor 2A |
3p57_C | 7e-16 | 9 | 93 | 1 | 85 | Myocyte-specific enhancer factor 2A |
3p57_D | 7e-16 | 9 | 93 | 1 | 85 | Myocyte-specific enhancer factor 2A |
3p57_I | 7e-16 | 9 | 93 | 1 | 85 | Myocyte-specific enhancer factor 2A |
3p57_J | 7e-16 | 9 | 93 | 1 | 85 | Myocyte-specific enhancer factor 2A |
5f28_A | 7e-16 | 9 | 93 | 2 | 86 | MEF2C |
5f28_B | 7e-16 | 9 | 93 | 2 | 86 | MEF2C |
5f28_C | 7e-16 | 9 | 93 | 2 | 86 | MEF2C |
5f28_D | 7e-16 | 9 | 93 | 2 | 86 | MEF2C |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_13317 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020216947.2 | 1e-167 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A151TK32 | 1e-165 | A0A151TK32_CAJCA; Agamous-like MADS-box protein AGL62 | ||||
STRING | XP_007157187.1 | 1e-110 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 3e-51 | AGAMOUS-like 61 |